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Counting Dogs

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Natural selection
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Recently, Mark Frank and I had a brief dialogue in the OP,“Didn’t everyone already know this about dogs?”
I’ve decided to clean it up a bit and re-post it because after my last question, I received no responses. At the outset, I would like to say that I place no blame about lack of responses on Mark Frank or anyone else in the last OP (as my post was rather quickly buried.)

Having said that, in this OP I would like somebody to address the question.

After one go around where I’d suggested that “success” should be counted as an increase in genetic information, Mark Frank corrected me, writing:

In biology success is breeding in the available environment. As a result there are about 400 million dogs in the world. There are about 200,000 wolves and they are extinct or endangered in many geographies. It is irrelevant how they would thrive without us. We are the dog’s environment and they have exploited that very effectively getting us to care for them by manipulating our parental instincts (and also providing some services).

and

I had in mind the biologist’s definition of the success of a species. This is purely and simply the species ability to reproduce in the world as it is . . . The genome is only relevant to the extent that it contributes to this. Any other definition of success leads to the odd result that a species could be highly “successful” but failing to survive.

In both cases, Mark Frank references “(I)n biology” and “the biologist’s” definition, so I will stipulate for the sake of this post that the convention in biology is that a species’ success is simply increase in number.

My response to Mark Frank:
According to your definition, evolutionary success has only to do with the genome (of the organism in question) so far as it informs the ability to reproduce “in the world as it is.” Is that about right?

In the case of domesticated dogs, I am informed that there is a loss of genetic information. And, you stated that dogs enjoy (numerical) success. Dogs, whether by breed or by number, are successful because of their responses to specific environmental nuances (e.g. we like dogs that chase sheep without eating them, so we feed them kibble and help them reproduce). This is easily measured by the increase in number of dogs (as compared to wolves, for example). One might even suggest that even if the narrative concerning sheep and kibble is just that, an unscientific narrative. Numbers don’t lie. Is that about right?

Onward:
Michael Behe in his controversial book, The Edge of Evolution, writes that such is generally the case for malaria-resistance — that the battle involves organisms “enjoying” loss of genomic info, to better get over on malaria so they can live to reproduce, (oh, and in turn, strains of plasmodium falciparum are doing likewise, sacrificing function, via loss of genetic information, to reproduce) –all of this only when necessary, or as Mark Frank suggested, “in the world as it is.”

Please, correct me if I am wrong, but don’t most (all?) scientists in the field agree with Behe’s assessment? That is, the “trench warfare” described by Behe is not actually that controversial, but an accepted finding.

It seems to me that an organism’s response to the environment (“in the world as it is”) involves dumping, if necessary, genomic information to succeed. Whether the selection is artificial or natural, the far, far, easier pathway for organisms is to lose genomic information. In fact, this is the dominant, almost universal, response according to scientific studies. . .

My question:

How could these more immediate pathways of losses of information possibly square with the evolutionary claim that natural selection (along with its numerical “success”) accounts for increased information in the genome, not only in a given organism, but for all organisms over the entire history of life on earth?

I thank you in advance for your considered responses.

Comments
Tim, I gave you the correct answer in my comment. All this discussion about dog breeding or dog breeds is nonsense. They are all one species and can inner breed. Each breed has less genetic information which is why they have distinct features. No one holds them up as an example of evolution. If they do then they are fools. This is interesting how people who don't have a clue about this actually comment here.jerry
November 2, 2014
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Phoodoo @13, Thank you for your comment, however, I must insist that we stay on topic. The micro-macro debate can wait for another day. Actually, I believe some of Mark Frank's comments concerning the "world as it is" may have addressed that topic in a left-handed way, dispensing with both prefixes at once. Anyway, I just want this to be a dialogue about pathways, genetic information, selection, information, trajectories, etc . . . thanks again.Tim
November 2, 2014
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Enkidu @10, Please stay on topic. I am not interested in biologists' knowledge of the artificial nature of dog breeding, the lack of homogeneity across breeds, or that stable populations maintain stable pools. The information you cited on bottlenecks has nothing to do with the question. So, we are left with your comment concerning duplication and point mutations. If you would like to pursue and strengthen that thought, please feel free to do so, but comments such as your entire post @11 are off topic. If you would like to pursue those, please do so elsewhere. As for your assertion concerning gene duplication and point mutation, please comment on either the original article, or Behe's review of studies on malaria, thank you. What possible difference could the bottleneck created by artificial selection make to strengthen your point that the amount of information has increased. If the bottleneck has reduced function, your only recourse seems to be the claim that information has increased because there are more dogs. Yikes. I hope that is not all you have to offer. What I want to know about is the immediacy of the pathways expedited in artificial selection as well as apparent "trench warfare" described by Behe in malaria studies. All I see is loss of function and genetic information. Solutions involving loss of information and/or function at the individual organism level are described to be many factors more common than similarly efficacious point mutations. If you are unwilling to speak to these topics, that is fine. I remain curious about what evolutionary explanation could possibly turn the tide in these two examples. At this time, I remain unconvinced of the evolutionary narrative.Tim
November 2, 2014
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Enkidu, Are you claiming that Dawkins doesn't make the argument that domesticated dogs are a good example of evolution? And you have read The Greatest Show on Earth right? And you are still want to have this argument? Oh wait, I see what you are saying, dogs are an example of "micro Evolution" not macro-evolution! Very interesting. Tell me if you don't mind, what is the difference between micro and macro evolution? I had this crazy impression that evolutionists considered it the same thing, silly me.phoodoo
November 2, 2014
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"If anything it will tend to very slowly rise as events like gene duplication followed by point mutations will increase the genome size and complexity." Actually, you have no empirical evidence that gene duplication followed by point mutations will increase functional information. To claim that functional information can arise in such manner without an empirical demonstration is basically the propaganda you accuse creationists of. i.e. a 'just so' story! Michael Behe finds Loss of Function Mutations Challenge the Darwinian Model - Casey Luskin - August 24, 2013 Excerpt: "Because of the many ways in which a gene can be altered to lose function, the LOF mutation would have a rate several orders of magnitude greater than that of the GOF mutation for the duplicated gene." http://www.evolutionnews.org/2013/08/in_biological_i_1075591.html Evolution by Gene Duplication Falsified - December 2010 Excerpt: The various postduplication mechanisms entailing random mutations and recombinations considered were observed to tweak, tinker, copy, cut, divide, and shuffle existing genetic information around, but fell short of generating genuinely distinct and entirely novel functionality. Contrary to Darwin’s view of the plasticity of biological features, successive modification and selection in genes does indeed appear to have real and inherent limits: it can serve to alter the sequence, size, and function of a gene to an extent, but this almost always amounts to a variation on the same theme—as with RNASE1B in colobine monkeys. The conservation of all-important motifs within gene families, such as the homeobox or the MADS-box motif, attests to the fact that gene duplication results in the copying and preservation of biological information, and not its transformation as something original. http://www.creationsafaris.com/crev201101.htm#20110103abornagain77
November 2, 2014
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phoodoo "Why would you like to see the claim that Dawkins and Tyson have used the examples of dogs as examples of macro-evolution supported? Their names aren’t even mentioned in this article," From the DI article The Dog Delusion
"Dawkins, for example, concluded his New York Times review of Michael Behe's book The Edge of Evolution with a shout out to canines" "Neil deGrasse Tyson takes up the cry for dog breeds as a proof of macroevolution."
You'd have marginally more credibility if you actually read the article being discussed. "Are you admitting that Dogs are a terrible example for evolution" Dogs are a great example of evolution - the change in alleles in a gene pool over time and the ability to alter morphologies. They just aren't an example of macroevolution as the DI dishonestly attributes to science. Why do you suppose the DI has to lie about the actual science all the time?Enkidu
November 2, 2014
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Thanks for the effort Tim. The reason I ask is that this latest anti-evolution salvo about dogs isn't saying anything that biologists haven't known for 50 years. In a homogenous stable population the overall genetic information in the gene pool will remain basically stable too. If anything it will tend to very slowly rise as events like gene duplication followed by point mutations will increase the genome size and complexity. What happens in artificial selection is just a small portion of the overall population is chosen and bred for specific traits. This in effect creates a population bottleneck in that group. The chosen traits will usually emerge (i.e. the different breeds of dogs) but the genetic variation in each breed is greatly reduced since it no longer mixes with the overall dog gene pool. The lack of genetic diversity in each specialized breed leads to the detrimental health effects seen in bottlenecks. This is what is being touted as a "loss of information". In reality since the dog population (and the gene pool) has grown so large in the last 10,000 years the overall genetic information in the species has actually increased. Sadly Creationist organizations like the DI love to take real science and spin it like this until it's unrecognizable. It's basically propaganda aimed at laymen.Enkidu
November 2, 2014
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Enkidu, Why would you like to see the claim that Dawkins and Tyson have used the examples of dogs as examples of macro-evolution supported? If someone went through the time and effort to show you this, what would it change in your thinking or your discussions? Their names aren't even mentioned in this article, but so what? Are you admitting that Dogs are a terrible example for evolution, and that anyone who would suggest this is either stupid or mis-informed? Are you acknowledging that dogs pose a problem for evolutionary theory, in that all the changes we see in dogs appear to come at the expense of some functioning? Or are you, as usual, you looking for some reason, any reason at all, to say, well, it doesn't change my belief, its not a problem for evolution, and more denials ad infinitum ? Many evolutionist websites for years have used the examples of dogs to suggest that we can see the great powers of evolution by just looking at dogs. If you don't know this, once again, you are willfully uneducated on the subject. I could show you where Dawkins has said this, but what's the point. You don't want truth.phoodoo
November 2, 2014
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I got this from Biology Online: http://www.biology-online.org/dictionary/Genetic_information
Genetic information: the heritable biological information coded in the nucleotide sequences of dna or rna (certain viruses), such as in the chromosomes or in plasmids.
. . .which seems fine to me. I suppose that would be for both individuals as well as populations. Alleles are certainly different information. I am not sure that they would be counted as additional information. When you ask,
Can you please give me the method of quantifying the “genetic information” in a genome to tell if increased, decreased, or stayed the same in any given generation?
I confess, I cannot. I merely took it on the authority of Dr. Werner Gieffers, and so I direct you to this quote from the cited article,
On the basis of research of many experts in the relevant fields, Lönnig proves that the enormous variability of our domestic dogs essentially originated by reductions and losses of functions of genes of the wolf.
I don't know how those guys do it, but apparently it is rather a common occurrence. Then, there's this:
Matti Leisola, professor emeritus at the Helsinki University of Technology, [calls] the book a "colossal and detailed study."
I hope this helps. Thank you for your comments.Tim
November 2, 2014
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Jerry@1 "So natural selection doesn’t increase the information in the gene pool. This is why natural selection is really a diversion. Supposedly, the real evolutionary process goes like this. Somewhere off in the genome, mutations are going on to junk DNA which are not selected for but somehow over time will lead to a new allele. Then somehow, this allele gets expressed and has an effect on the organism’s reproductive rate and survival success." OK, so which is it? Is "natural selection" a diversion? Or is "survival success" the key to evolution? And exactly how are these 2 terms different in practice? As far as I know, natural selection is measured exclusively by the rate of successful survival and reproduction. Or the net results of the reproductive rate and the survival rate. Humans have a very low reproductive rate compared with most other mammals, however, humans are the most successful large mammal that has ever existed, based on worldwide species population and range of environments in which we can breed successfully.mahuna
November 2, 2014
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My apologies Tim. Can you please give me the scientific definition of "genetic information" as you are using it? Are you speaking of the information in one individual or in the whole gene pool? Do different alleles count as different information? Can you please give me the method of quantifying the "genetic information" in a genome to tell if increased, decreased, or stayed the same in any given generation? Thanks.Enkidu
November 2, 2014
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Enkidu @2, 4 With all due respect, although you are free to ask that some claims be supported, because such a claim was not made here, your comment is not relevant. Please stay on topic. The topic concerns selection, whether artificial or natural, and its apparent effect on decreasing information in the genome of organisms as they negotiate changing environments and implications, if any, for the standard narrative. Again, please stay on topic, thank you.Tim
November 2, 2014
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ppolish Dawkins & Tyson are not Scientists. They are “Science Communicators”. They really don’t count. Do out have an example of real scientists who have not said dogs are macro Enkidu? The Creationists at the DI are the ones who specifically named Dawkins and Tyson as saying dogs are evidence for macroevolution. I'd like to see that claim supported. Can you do it or not?Enkidu
November 2, 2014
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Dawkins & Tyson are not Scientists. They are "Science Communicators". They really don't count. Do out have an example of real scientists who have not said dogs are macro Enkidu?ppolish
November 2, 2014
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Can someone please show me where any scientist offered the variety in dogs as evidence of macroevolution? Macroevolution is defined as evolution at or above species level. Domestic dogs for all their variations are still one species. Dawkins in Greatest Show On Earth discusses dog variety as evidence of the creative power of evolution to produce new forms. Neil de Grasse Tyson also offers the variation in dogs through artificial selection as an example of evolutionary change. However, AFAIK neither ever said anything about dogs demonstrating macroevolution. Looks like this whole thing is a big strawnman cooked up by Creationists as yet another dishonest propaganda ploy. I'm willing to be corrected. Anyone?Enkidu
November 2, 2014
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How could these more immediate pathways of losses of information possibly square with the evolutionary claim that natural selection (along with its numerical “success”) accounts for increased information in the genome, not only in a given organism, but for all organisms over the entire history of life on earth?
Natural selection is a culling process which means that over time it will reduce the information in the gene pool. Some think this may be the cause for extinction of a lot of populations. As they loose information, the population does not have the resources to adapt to a change in environment. So natural selection doesn't increase the information in the gene pool. This is why natural selection is really a diversion. Supposedly, the real evolutionary process goes like this. Somewhere off in the genome, mutations are going on to junk DNA which are not selected for but somehow over time will lead to a new allele. Then somehow, this allele gets expressed and has an effect on the organism's reproductive rate and survival success. So when the allele poofs into expression, natural selection can now have an affect on this new allele. Has this ever happened? Probably, but not too often and there is no evidence that it ever produced anything meaningful. There are some times when there are small mutations to a coding region in a genome which has the effect of survival of the organism. Think fur or skin color in an animal. Again trivial but it could lead to slightly increased information in the gene pool. I hope this answers your question. Natural Selection is an important factor in genetics but is essentially meaningless in the overall evolution debate. But that won't stop people from referring to the concept all the time even when they never had one good example of it ever working.jerry
November 2, 2014
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