He stands by what he wrote on Ebola virus six years ago:
The bottom line is that, while of course the virus is dangerous, the situation can be compared to a strong storm on the ocean. The waves may be huge and the surface roiling, but the deeper waters continue as they always have, essentially undisturbed. In a similar way, although superficially it changes very rapidly, some researchers think that the coronavirus and many other virus types have remained basically the same for tens of millions of years…
So, do I think viruses were designed? Yes, I most certainly do! The viruses of which we are aware — including the coronaviruses, Ebola, and HIV — are exquisitely, purposively arranged, which is the clear signature of intelligent design. Well, then does that mean the designer is evil and wants people to suffer? No, not necessarily. I’m a biochemist, not a philosopher. Nonetheless, I see no reason why a designer even of such things as viruses should be classified as bad on that basis alone.
I started this post with an analogy of a storm on the ocean. Certainly, if we were on a ship in a powerful storm, we might be excused for thinking storms are bad. But in calmer moments we understand that on balance the ocean is very good and that, given an ocean and the laws of nature, storms will arise from time to time. What’s more, we just might get caught in one. In the same way, most viruses do not affect humans and may well have a positive, necessary role to play in nature of which we are currently unaware. (I would bet on it.) From time to time a storm arises in the virosphere and affects humans. But that’s no reason to think either that viruses weren’t designed or that the designer of viruses isn’t good.Michael Behe, “Evolution, Design, and COVID-19” at Evolution News and Science Today
Ebola six years ago? Ebola six years ago? Behe, M. J. 2014. Evolution and the Ebola virus: Pacing a small cage.