Intelligent Design

Origin of Life Research Has Failed to Generate a Coherent and Persuasive Framework

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Because while Franklin Haroldwonders in 2014 if “we may still be missing some essential insight” (given that a century of origin of life research “has failed to generate a coherent and persuasive framework that gives meaning to the growing heap of data and speculation” and has “remarkably little to show for” for all the effort expended), it was, in fact, just over a century ago when evolution’s co-founder, the great Alfred Russel Wallace, provided exactly what Harold may be looking for, to wit  Read more

68 Replies to “Origin of Life Research Has Failed to Generate a Coherent and Persuasive Framework

  1. 1
    rvb8 says:

    And yet micro biologists, biology departments, private research institutes, Nobel laureats, nationally funded national science institutes, private enterprises, and Joe Blogg your average interested amateur all keep a close eye on OOL developments;fools.

  2. 2
    Silver Asiatic says:

    Naturalism … cannot consider the possibility that there is no naturalistic explanation for the DNA code. This is science’s blind spot … No matter how badly naturalism performs, when explanations do not fit the data very well, they are said to be research problems. They must be, for there is no option for considering that a problem might be better handled by another paradigm.

    Great point. There’s no way for naturalism/materialism to evaluate itself as a paradigm. It can’t even consider the possibility that there is a non-naturalistic explanation for anything at all, or that anything non-naturalistic exists.

    That’s why I think it’s essential for materialist-atheists to keep open the possibility that there is something more than nature, and therefore, to use the right tools (obviously, not empirical science) to evaluate such a thing.

    The choice of the naturalistic paradigm as the only source and method requires something other than naturalism.

    The problem with evolutionary theory is not that the naturalistic approach might occasionally be inadequate. The problem is that evolutionists would never know any better.

    Evolutionists could and necessarily would have to know better (as above, you can’t use science to choose your philosophical paradigm) but they have to blind themselves to other knowledge sources.

    Our problem may be that our methodological naturalism mandate has planted us firmly in the belly of anti realism. Or more simply put, there may be no naturalistic explanation. It may not be that we are missing some essential insight, but rather that there simply is no such insight to be found.

    Excellent point. Scientism makes claims to be the true realism, but it can’t evaluate itself and could actually be anti-realism (fantasy) and would never know that.

    In fact that is what the science has been indicating for a long time. The strictly naturalistic evolution of life, of eukaryotes, of multicellular species, of fish, of reptiles, of amphibia, of mammals, and of a thousand other novelties is unlikely. Period. That is what the science is telling us, like it or not.

    Exactly. It’s one thing if we said that science needs to consider the existence of fairies and goblins. But it’s simply as modest as saying that “there could be something other than naturalistic forces at work” and that would explain why naturalism cannot find the answers.

    But evolutionists cannot say that. They cannot admit to the scientific truth. In fact, quite the opposite and quite unbelievably, they insist evolution is a fact beyond all reasonable doubt.

    Evolutionists say that their skeptics oppose science, present theories that are driven by presupposition and are unfalsifiable. But all of that precisely describes evolution. Why can’t we just tell the truth?

  3. 3
    humbled says:

    The scientific evidence continues to undermine Darwinian evolution. With each new discovery we recognise the complete and utter failure of Darwinian evolution to explain anything worth while. It is the dead dog that each new discovery continues to kick. It is sad, it is wrong and it really needs to be laid to rest.

    But it won’t. Evolution is big business. The new state religion. The Darwin faithful will not give it up.

  4. 4
    bornagain77 says:

    as to:

    “there was at some stage in the history of the earth, after the cooling process, a definite act of creation. Something came from the outside. Power was exercised from without. In a word, life was given to the earth. … Postulate organization first, and make it the origin and cause of life, and you lose yourself in a maze of madness. An honest and unswerving scrutiny of nature forces upon the mind this certain truth, that at some period of the earth’s history there was an act of creation …”
    Alfred Russel Wallace

    There is actually very good evidence that “Power was exercised from without” on multiple occasions in the formation of life on earth. There is a ‘higher dimensional’ stamp of individuality on each unique species. A transcendent ‘4-Dimensional’ stamp of uniqueness on each kind of species. A stamp that is not reducible to 3-Dimensional material processes.,,, A transcendent ‘signature’ that each species was created from a higher dimension:

    Scaling of Brain Metabolism with a Fixed Energy Budget per Neuron:
    Excerpt: This suggests that the energy budget of the whole brain per neuron is fixed across species and brain sizes,
    http://www.plosone.org/article.....ne.0017514

    4-Dimensional Quarter Power Scaling In Biology – video
    http://www.metacafe.com/w/5964041/

    The predominance of quarter-power (4-D) scaling in biology
    Excerpt: Many fundamental characteristics of organisms scale
    with body size as power laws of the form:

    Y = Yo M^b,

    where Y is some characteristic such as metabolic rate, stride length or life span, Yo is a normalization constant, M is body mass and b is the allometric scaling exponent.
    A longstanding puzzle in biology is why the exponent b is usually some simple multiple of 1/4 (4-Dimensional scaling) rather than a multiple of 1/3, as would be expected from Euclidean (3-Dimensional) scaling.
    http://www.nceas.ucsb.edu/~dre.....18_257.pdf

    “Although living things occupy a three-dimensional space, their internal physiology and anatomy operate as if they were four-dimensional. Quarter-power scaling laws are perhaps as universal and as uniquely biological as the biochemical pathways of metabolism, the structure and function of the genetic code and the process of natural selection.,,, The conclusion here is inescapable, that the driving force for these invariant scaling laws cannot have been natural selection.”
    Jerry Fodor and Massimo Piatelli-Palmarini, What Darwin Got Wrong (London: Profile Books, 2010), p. 78-79

    Here is, what a Darwinist termed, a ‘horrendously complex’ metabolic pathway (which operates as if it were ’4-Dimensional’):

    ExPASy – Biochemical Pathways – interactive schematic
    http://biochemical-pathways.com/#/map/1

    And remember, Darwinian evolution has yet to explain a single gene/protein of those ‘horrendously complex’ 4-Dimensional metabolic pathways.

    “Charles Darwin said (paraphrase), ‘If anyone could find anything that could not be had through a number of slight, successive, modifications, my theory would absolutely break down.’ Well that condition has been met time and time again. Basically every gene, every protein fold. There is nothing of significance that we can show that can be had in a gradualist way. It’s a mirage. None of it happens that way.
    – Doug Axe PhD. – Nothing In Molecular Biology Is Gradual – video
    http://www.metacafe.com/watch/5347797/

    The reason why a ‘higher dimensional’ 4-Dimensional structure, such as a ‘horrendously complex’ metabolic pathway, would be, for all intents and purposes, completely invisible to a 3-Dimensional process, such as Natural Selection, is best illustrated by ‘flatland’:

    Flatland – 3D to 4D shift – Dr. Quantum – video
    http://www.youtube.com/watch?v=BWyTxCsIXE4

    Thus, with apologies to C.S. Lewis,,,

    If I find in myself a desire 4 dimensional quarter power scaling which no experience 3-Dimensional materialistic process in this world can satisfy explain, the most probable explanation is that I was made for another world.
    C.S. Lewis (Mere Christianity, Bk. III, chap. 10, “Hope”)

    Of related interest:

    Please compare the similarity of the optical effect, noted at the 3:22 minute mark of the following video, when the 3-Dimensional world ‘folds and collapses’ into a tunnel shape around the direction of travel as a ‘hypothetical’ observer moves towards the ‘higher dimension’ of the speed of light, with the testimony of the ‘light at the end of the tunnel’ reported in very many Near Death Experiences: (Of note: This following video was made by two Australian University Physics Professors with a supercomputer.)

    Approaching The Speed Of Light – Optical Effects – video
    https://www.youtube.com/watch?v=JQnHTKZBTI4

    The NDE and the Tunnel – Kevin Williams’ research conclusions
    Excerpt: “I started to move toward the light. The way I moved, the physics, was completely different than it is here on Earth. It was something I had never felt before and never felt since. It was a whole different sensation of motion. I obviously wasn’t walking or skipping or crawling. I was not floating. I was flowing. I was flowing toward the light. I was accelerating and I knew I was accelerating, but then again, I didn’t really feel the acceleration. I just knew I was accelerating toward the light. Again, the physics was different – the physics of motion of time, space, travel. It was completely different in that tunnel, than it is here on Earth. I came out into the light and when I came out into the light, I realized that I was in heaven.”
    Barbara Springer – Near Death Experience – The Tunnel – video
    https://vimeo.com/79072924

    Verse and Music:

    2 Corinthians 4:18
    So we fix our eyes not on what is seen, but on what is unseen, since what is seen is temporary, but what is unseen is eternal.

    Brooke Fraser – CS Lewis song
    https://www.youtube.com/watch?v=PycBrNP8dXg

  5. 5
    Zachriel says:

    bornagain77 (quoting Fodor & Piatelli-Palmarini): The conclusion here is inescapable, that the driving force for these invariant scaling laws cannot have been natural selection.

    Not only is the claim wrong, but the reason had been known for a decade when they made the claim. Contrary to Fodor & Piatelli-Palmarini, a quarter-power law is consistent with selection for energy efficiency. The reason it’s a quarter-power law is due to the fractal nature of distribution systems. See Banavar et al., Size and form in efficient transportation networks, Nature 1999.

  6. 6
    bornagain77 says:

    Actually Zach, contrary to whatever ‘just so story’ you may want to believe to be true for the creative power of natural selection, natural selection is not a ‘force’ that pushes, pulls, or creates, anything. Professor of Evolutionary Biology at Cornell, William Provine himself admits that Natural Selection is not a ‘force’ that pushes or pulls anything,,

    “Natural selection does not act on anything, nor does it select (for or against), force, maximize, create, modify, shape, operate, drive, favor, maintain, push, or adjust. Natural selection does nothing…. Having natural selection select is nifty because it excuses the necessity of talking about the actual causation of natural selection. Such talk was excusable for Charles Darwin, but inexcusable for evolutionists now. Creationists have discovered our empty “natural selection” language, and the “actions” of natural selection make huge, vulnerable targets.”
    The Origin of Theoretical Population Genetics, 2001 (pp. 199-200) William Provine – Professor of Evolutionary Biology – Cornell University

    To the extent that Natural Selection can be empirically observed to do anything, Natural Selection is found to be a eliminative force not a generative force as is commonly believed in Darwinian story telling:

    “…but Natural Selection reduces genetic information and we know this from all the Genetic Population studies that we have…”
    Maciej Marian Giertych – Population Geneticist – member of the European Parliament – EXPELLED – Natural Selection And Genetic Mutations – video
    https://www.youtube.com/watch?v=6z5-15wk1Zk

    From a Frog to a Prince – video (17:00 minute mark Natural Selection Reduces Genetic Information) – No Beneficial Mutations – Gitt – Spetner – Denton – video
    https://www.youtube.com/watch?v=ClleN8ysimg&feature=player_detailpage#t=1031

    “A Dutch zoologist, J.J. Duyvene de Wit, clearly demonstrated that the process of speciation (such as the appearance of many varieties of dogs and cats) is inevitably bound up with genetic depletion as a result of natural selection. When this scientifically established fact is applied to the question of whether man could have evolved from ape-like animals,’.. the transformist concept of progressive evolution is pierced in its very vitals.’ The reason for this, J.J. Duyvene de Wit went on to explain, is that the whole process of evolution from animal to man ” ‘ . . would have to run against the gradient of genetic depletion. That is to say, . . man )should possess] a smaller gene-potential than his animal ancestors! [I] Here, the impressive absurdity becomes clear in which the transformist doctrine [the theory of evolution] entangles itself when, in flat contradiction to the factual scientific evidence, it dogmatically asserts that man has evolved from the animal kingdom!” —Op. cit., pp. 129-130. [Italics his; quotations from *J.J. Duyvene de Wit, A New Critique of the Transformist Principle in Evolutionary Biology (1965), p. 56,57.]
    http://www.godrules.net/evolut.....vlch15.htm

    “We found an enormous amount of diversity within and between the African populations, and we found much less diversity in non-African populations,” Tishkoff told attendees today (Jan. 22) at the annual meeting of the American Association for the Advancement of Science in Anaheim. “Only a small subset of the diversity in Africa is found in Europe and the Middle East, and an even narrower set is found in American Indians.”
    Tishkoff; Andrew Clark, Penn State; Kenneth Kidd, Yale University; Giovanni Destro-Bisol, University “La Sapienza,” Rome, and Himla Soodyall and Trefor Jenkins, WITS University, South Africa, looked at three locations on DNA samples from 13 to 18 populations in Africa and 30 to 45 populations in the remainder of the world.-

    etc.. etc..

    As well, Natural Selection, to the extent that it can be observed to do anything, is grossly inadequate to do the work required of it, especially at the metazoan level, because of what is termed ‘the princess and the pea’ paradox. The devastating ‘princess and the pea’ paradox is clearly elucidated by Dr. John Sanford, at the 8:14 minute mark, of this following video,,,

    Genetic Entropy – Dr. John Sanford – Evolution vs. Reality – video
    http://vimeo.com/35088933

    Dr. Sanford points out, in the preceding video, that Natural Selection acts at the coarse level of the entire organism (phenotype) and yet the vast majority of mutations have effects that are only ‘slightly detrimental’, and have no noticeable effect on phenotypes, and are thus far below the power of Natural Selection to remove from genomes before they spread throughout the population. Here is a peer-reviewed paper by Dr. Sanford on the subject:

    “Selection Threshold Severely Constrains Capture of Beneficial Mutations” – John Sanford – September 6, 2013
    Excerpt of concluding comments: Our findings raise a very interesting theoretical problem — in a large genome, how do the millions of low-impact (yet functional) nucleotides arise? It is universally agreed that selection works very well for high-impact mutations. However, unless some new and as yet undiscovered process is operating in nature, there should be selection breakdown for the great majority of mutations that have small impact on fitness.,,,
    We show that selection breakdown is not just a simple function of population size, but is seriously impacted by other factors, especially selection interference. We are convinced that our formulation and methodology (i.e., genetic accounting) provide the most biologically-realistic analysis of selection breakdown to date.
    http://www.worldscientific.com.....08728_0011

    Here are a few more notes on this insurmountable ‘princess and the pea’ paradox:

    Evolution vs. Genetic Entropy – Andy McIntosh – video
    https://vimeo.com/91162565

    The GS Principle (The Genetic Selection Principle) – Abel – 2009
    Excerpt: The GS Principle, sometimes called “The 2nd Law of Biology,” states that selection must occur at the molecular/genetic level, not just at the fittest phenotypic/organismic level, to produce and explain life.,,, Natural selection cannot operate at the genetic level.
    http://www.bioscience.org/2009.....lltext.htm

    Moreover, I hold that it is is fairly clear to see that the reason why internal physiology and anatomy operate as if they were four-dimensional instead of three dimensional is because of exactly what Darwinian evolution has consistently failed to explain the origination of. i.e. functional information. ‘Higher dimensional’ information, which is bursting at the seams in life, simply cannot be reduced to any 3-dimensional energy-matter basis:

    “One of the things I do in my classes, to get this idea across to students, is I hold up two computer disks. One is loaded with software, and the other one is blank. And I ask them, ‘what is the difference in mass between these two computer disks, as a result of the difference in the information content that they posses’? And of course the answer is, ‘Zero! None! There is no difference as a result of the information. And that’s because information is a mass-less quantity. Now, if information is not a material entity, then how can any materialistic explanation account for its origin? How can any material cause explain it’s origin?
    And this is the real and fundamental problem that the presence of information in biology has posed. It creates a fundamental challenge to the materialistic, evolutionary scenarios because information is a different kind of entity that matter and energy cannot produce.
    In the nineteenth century we thought that there were two fundamental entities in science; matter, and energy. At the beginning of the twenty first century, we now recognize that there’s a third fundamental entity; and its ‘information’. It’s not reducible to matter. It’s not reducible to energy. But it’s still a very important thing that is real; we buy it, we sell it, we send it down wires.
    Now, what do we make of the fact, that information is present at the very root of all biological function? In biology, we have matter, we have energy, but we also have this third, very important entity; information. I think the biology of the information age, poses a fundamental challenge to any materialistic approach to the origin of life.”
    -Dr. Stephen C. Meyer earned his Ph.D. in the History and Philosophy of science from Cambridge University for a dissertation on the history of origin-of-life biology and the methodology of the historical sciences.

    In the following paper, Andy C. McIntosh, professor of thermodynamics and combustion theory at the University of Leeds, holds that non-material information is what is constraining the cell to be so far out of thermodynamic equilibrium. Moreover, Dr. McIntosh holds that regarding information as independent of energy and matter ‘resolves the thermodynamic issues and invokes the correct paradigm for understanding the vital area of thermodynamic/organisational interactions’.

    Information and Thermodynamics in Living Systems – Andy C. McIntosh – 2013
    Excerpt: ,,, information is in fact non-material and that the coded information systems (such as, but not restricted to the coding of DNA in all living systems) is not defined at all by the biochemistry or physics of the molecules used to store the data. Rather than matter and energy defining the information sitting on the polymers of life, this approach posits that the reverse is in fact the case. Information has its definition outside the matter and energy on which it sits, and furthermore constrains it to operate in a highly non-equilibrium thermodynamic environment. This proposal resolves the thermodynamic issues and invokes the correct paradigm for understanding the vital area of thermodynamic/organisational interactions, which despite the efforts from alternative paradigms has not given a satisfactory explanation of the way information in systems operates.,,,
    http://www.worldscientific.com.....08728_0008

    Here is a recent video by Dr. Giem, that gets the main mathematical points of Dr. McIntosh’s paper over very well for the lay person:

    Biological Information – Information and Thermodynamics in Living Systems 11-22-2014 by Paul Giem (A. McIntosh) – video
    https://www.youtube.com/watch?v=IR_r6mFdwQM

  7. 7
    bornagain77 says:

    Dr. McIntosh’s contention that ‘non-material information’ must be constraining life to be so far out of thermodynamic equilibrium has been borne out empirically. i.e. It is now found that ‘non-local’, beyond space-time matter-energy, Quantum entanglement/information ‘holds’ DNA (and proteins) together:

    Quantum Information/Entanglement In DNA – short video
    https://vimeo.com/92405752

    Quantum entanglement holds together life’s blueprint – 2010
    Excerpt: When the researchers analysed the DNA without its helical structure, they found that the electron clouds were not entangled. But when they incorporated DNA’s helical structure into the model, they saw that the electron clouds of each base pair became entangled with those of its neighbours. “If you didn’t have entanglement, then DNA would have a simple flat structure, and you would never get the twist that seems to be important to the functioning of DNA,” says team member Vlatko Vedral of the University of Oxford.
    http://neshealthblog.wordpress.....blueprint/

    Coherent Intrachain energy migration at room temperature – Elisabetta Collini and Gregory Scholes – University of Toronto – Science, 323, (2009), pp. 369-73
    Excerpt: The authors conducted an experiment to observe quantum coherence dynamics in relation to energy transfer. The experiment, conducted at room temperature, examined chain conformations, such as those found in the proteins of living cells. Neighbouring molecules along the backbone of a protein chain were seen to have coherent energy transfer. Where this happens quantum decoherence (the underlying tendency to loss of coherence due to interaction with the environment) is able to be resisted, and the evolution of the system remains entangled as a single quantum state.
    http://www.scimednet.org/quant.....d-protein/

    That ‘non-local’ quantum entanglement, which conclusively demonstrates that ‘information’ in its pure ‘quantum form’ is completely transcendent of any time and space constraints (Bell, Aspect, Leggett, Zeilinger, etc..), should be found in molecular biology on such a massive scale, i.e. found in every DNA and protein molecule, is a direct empirical falsification of Darwinian claims, for how can the ‘non-local’ quantum entanglement ‘effect’ in biology possibly be explained by a material (matter/energy) cause when the quantum entanglement effect falsified material particles as its own causation in the first place? Appealing to the probability of various ‘random’ configurations of material particles, as Darwinism does, simply will not help since a timeless/spaceless cause must be supplied which is beyond the capacity of the material particles themselves to supply!

    Looking beyond space and time to cope with quantum theory – 29 October 2012
    Excerpt: “Our result gives weight to the idea that quantum correlations somehow arise from outside spacetime, in the sense that no story in space and time can describe them,”
    http://www.quantumlah.org/high.....uences.php

    Closing the last Bell-test loophole for photons – Jun 11, 2013
    Excerpt:– requiring no assumptions or correction of count rates – that confirmed quantum entanglement to nearly 70 standard deviations.,,,
    per physorg
    etc.. etc..

    In other words, to give a coherent explanation for an effect that is shown to be completely independent of any time and space constraints one is forced to appeal to a cause that is itself not limited to time and space! i.e. Put more simply, you cannot explain a effect by a cause that has been falsified by the very same effect you are seeking to explain! Improbability arguments of various ‘special’ configurations of material particles, which have been a staple of the arguments against neo-Darwinism, simply do not apply since the cause is not within the material particles in the first place!
    Thus Darwinism, even though most Darwinists such as Zach will refuse to accept the falsification, is empirically falsified as far as our best science can tell us.

    Verse and Music:

    John 1:1-4
    In the beginning was the Word, and the Word was with God, and the Word was God. He was in the beginning with God. All things were made through Him, and without Him nothing was made that was made. In Him was life, and the life was the light of men.

    Mannheim Steamroller (Live) – We Three Kings
    https://www.youtube.com/watch?v=iFd3X_CKFBo

  8. 8
    Mung says:

    I don’t understand what you people find incoherent or unpersuasive about “it just happened, that’s all.”

    POOF!

  9. 9
    bornagain77 says:

    OT: Dr. Giem has a new video lecture up:
    Biological Information – Criticizing ENCODE 12-13-2014 by Paul Giem – video
    https://www.youtube.com/watch?v=zhlFJO1WqVk

  10. 10
    Zachriel says:

    bornagain77: contrary to whatever ‘just so story’ you may want to believe to be true for the creative power of natural selection, natural selection is not a ‘force’ that pushes, pulls, or creates, anything.

    The effects of natural selection are easily demonstrated. It can be measured in the lab, and directly observed in nature.

    Fodor & Piatelli-Palmarini’s claim was that natural selection couldn’t cause the fourth-power law because the third-power law should have been the intuitively optimal result. However, fractal geometry of distribution systems means that the fourth-power law is the optimal result, so it is consistent with selection for energy efficiency.

  11. 11
    bornagain77 says:

    as to this claim:

    “The effects of natural selection are easily demonstrated. It can be measured in the lab,”

    That claim, as is usual with claims from Zach, is false. The types of mutations that natural selection is observed to fix in populations in the lab are not the types of mutations that neo-Darwinism needs to build the unfathomed integrated, and optimal, complexity we see in life:

    “The First Rule of Adaptive Evolution”: Break or blunt any functional coded element whose loss would yield a net fitness gain – Michael Behe – December 2010
    Excerpt: In its most recent issue The Quarterly Review of Biology has published a review by myself of laboratory evolution experiments of microbes going back four decades.,,, The gist of the paper is that so far the overwhelming number of adaptive (that is, helpful) mutations seen in laboratory evolution experiments are either loss or modification of function. Of course we had already known that the great majority of mutations that have a visible effect on an organism are deleterious. Now, surprisingly, it seems that even the great majority of helpful mutations degrade the genome to a greater or lesser extent.,,, I dub it “The First Rule of Adaptive Evolution”: Break or blunt any functional coded element whose loss would yield a net fitness gain.
    http://behe.uncommondescent.co.....evolution/

    Multiple Overlapping Genetic Codes Profoundly Reduce the Probability of Beneficial Mutation George Montañez 1, Robert J. Marks II 2, Jorge Fernandez 3 and John C. Sanford 4 – May 2013
    Excerpt: It is almost universally acknowledged that beneficial mutations are rare compared to deleterious mutations [1–10].,, It appears that beneficial mutations may be too rare to actually allow the accurate measurement of how rare they are [11].
    1. Kibota T, Lynch M (1996) Estimate of the genomic mutation rate deleterious to overall fitness in E. coli . Nature 381:694–696.
    2. Charlesworth B, Charlesworth D (1998) Some evolutionary consequences of deleterious mutations. Genetica 103: 3–19.
    3. Elena S, et al (1998) Distribution of fitness effects caused by random insertion mutations in Escherichia coli. Genetica 102/103: 349–358.
    4. Gerrish P, Lenski R N (1998) The fate of competing beneficial mutations in an asexual population. Genetica 102/103:127–144.
    5. Crow J (2000) The origins, patterns, and implications of human spontaneous mutation. Nature Reviews 1:40–47.
    6. Bataillon T (2000) Estimation of spontaneous genome-wide mutation rate parameters: whither beneficial mutations? Heredity 84:497–501.
    7. Imhof M, Schlotterer C (2001) Fitness effects of advantageous mutations in evolving Escherichia coli populations. Proc Natl Acad Sci USA 98:1113–1117.
    8. Orr H (2003) The distribution of fitness effects among beneficial mutations. Genetics 163: 1519–1526.
    9. Keightley P, Lynch M (2003) Toward a realistic model of mutations affecting fitness. Evolution 57:683–685.
    10. Barrett R, et al (2006) The distribution of beneficial mutation effects under strong selection. Genetics 174:2071–2079.
    11. Bataillon T (2000) Estimation of spontaneous genome-wide mutation rate parameters: whither beneficial mutations? Heredity 84:497–501.
    http://www.worldscientific.com.....08728_0006

    Response to John Wise – October 2010
    Excerpt: A technique called “saturation mutagenesis”1,2 has been used to produce every possible developmental mutation in fruit flies (Drosophila melanogaster),3,4,5 roundworms (Caenorhabditis elegans),6,7 and zebrafish (Danio rerio),8,9,10 and the same technique is now being applied to mice (Mus musculus).11,12 None of the evidence from these and numerous other studies of developmental mutations supports the neo-Darwinian dogma that DNA mutations can lead to new organs or body plans–because none of the observed developmental mutations benefit the organism.
    http://www.evolutionnews.org/2.....38811.html

    Inside the Human Genome: A Case for Non-Intelligent Design – Pg. 57 By John C. Avise
    Excerpt: “Another compilation of gene lesions responsible for inherited diseases is the web-based Human Gene Mutation Database (HGMD). Recent versions of HGMD describe more than 75,000 different disease causing mutations identified to date in Homo-sapiens.”

    I went to the mutation database website cited by John Avise and found:

    Mutation total (as of 2014-05-02) – 148,413
    http://www.hgmd.cf.ac.uk/ac/

    High Frequency of Cryptic Deleterious Mutations in Caenorhabditis elegans ( Esther K. Davies, Andrew D. Peters, Peter D. Keightley)
    “In fitness assays, only about 4 percent of the deleterious mutations fixed in each line were detectable. The remaining 96 percent, though cryptic, are significant for mutation load…the presence of a large class of mildly deleterious mutations can never be ruled out.”
    http://www.sciencemag.org/cgi/...../5434/1748

    Experimental Evolution in Fruit Flies (35 years of trying to force fruit flies to evolve in the laboratory fails, spectacularly) – October 2010
    Excerpt: “Despite decades of sustained selection in relatively small, sexually reproducing laboratory populations, selection did not lead to the fixation of newly arising unconditionally advantageous alleles.,,, “This research really upends the dominant paradigm about how species evolve,” said ecology and evolutionary biology professor Anthony Long, the primary investigator.
    http://www.arn.org/blogs/index.....ruit_flies

    Study demonstrates evolutionary ‘fitness’ not the most important determinant of success – February 7, 2014 – with illustration
    Excerpt: An illustration of the possible mutations available to an RNA molecule. The blue lines represent mutations that will not change its function (phenotype), the grey are mutations to an alternative phenotype with slightly higher fitness and the red are the ‘fittest’ mutations. As there are so few possible mutations resulting in the fittest phenotype in red, the odds of this mutation are a mere 0.15%. The odds for the slightly fitter mutation in grey are 6.7% and so this is far more likely to fix, and thus to be found and survive, even though it is much less fit than the red phenotype.,,,
    By modelling populations over long timescales, the study showed that the ‘fitness’ of their traits was not the most important determinant of success. Instead, the most genetically available mutations dominated the changes in traits. The researchers found that the ‘fittest’ simply did not have time to be found, or to fix in the population over evolutionary timescales.
    http://phys.org/news/2014-02-e.....ccess.html

    This following headline sums the preceding paper up very nicely:

    Fittest Can’t Survive If They Never Arrive – February 7, 2014
    http://crev.info/2014/02/fitte.....er-arrive/

  12. 12
    rvb8 says:

    Actually BA, evolution (neo-Darwinism) doesn’t ‘need’ the vast changes you claim. The incremental changes observed in the lab are perfectly sufficient over vast periods of time. I’m always dissapointed when people use the phrase ‘Cambrian Explosion’, as if it happened in six days, rather than the incomprehensible (to our human brain of 70 years of existence) millions of years.

    Also I’m not sure you should ally yourself to Provine. He thinks we have no free will, there is no life after death, there is no absolute foundation for right and wrong and there is no ultimate meaning to life; much as I do. You have chosen a strange bedfellow.

  13. 13
    Mung says:

    rvb8:

    Actually BA, evolution (neo-Darwinism) doesn’t ‘need’ the vast changes you claim. The incremental changes observed in the lab are perfectly sufficient over vast periods of time.

    bacteria remain bacteria, fruit flies remain fruit flies. No vast changes required when nothing changes.

    Who could disagree?

    I’m always dissapointed when people use the phrase ‘Cambrian Explosion’, as if it happened in six days, rather than the incomprehensible (to our human brain of 70 years of existence) millions of years.

    hilarious. simply hilarious. the entertainment here at UD never ends. it’s absolutely worth the price of admission.

    How much of science did you just invalidate with our inability to grasp the incomprehensible?

  14. 14
    rvb8 says:

    I think the idea is to strive to understand the ‘incomprehensible’, therefore making it comprehensible; that’s what science does Mung. By saying we don’t understand something means we humans with our selected for curiosity will go and try to understand it. I didn’t invalidate science by saying many things are incomprehensible, it was a shout of joy. After all, if it’s designed by humans we know all we need to know and there is no further motivation to question. Being god would be so dull, I thank god everyday I’m not her.

  15. 15
    Zachriel says:

    bornagain77: The types of mutations that natural selection is observed to fix in populations in the lab are not the types of mutations that neo-Darwinism needs to build the unfathomed integrated, and optimal, complexity we see in life

    As we said, the effects of natural selection are directly observable, in particular, its optimizing capability.

    By the way, your quote of Fodor & Piattelli-Palmarini is mangled, and includes text from another author. Reading the original Fodor & Piattelli-Palmarini provides a good example of why philosophers shouldn’t think they can overturn well-established science with facile arguments.

  16. 16
    Joe says:

    Umm, natural selection doesn’t optimize and doesn’t have any “optimizing capability”. Whatever is good enough to survive and reproduce does so.

    And no, there aren’t any known microevolutionary events that can extrapolated into macroevolution. Not one.

  17. 17
    bornagain77 says:

    although they did quote a researcher on 4-D power scaling in the first part of the quote, the quote stands as to its intent and integrity:

    Physicists and biologists at Los Alamos, Santa Fe and Albuquerque institutes attribute the “fourth dimension” to the fractal-like architecture of the organisms’ vascular networks. The guiding criteria, they found, was “the maximization of the inner and outer exchange surfaces, while minimizing distances of internal transport (thus maximizing the rates of transport).” They quote West et al. (1999),

    “Although living things occupy a three-dimensional space, their internal physiology and anatomy operate as if they were four-dimensional. Quarter-power scaling laws are perhaps as universal and as uniquely biological as the biochemical pathways of metabolism, the structure and function of the genetic code and the process of natural selection.”

    They comment,

    “In the words of these authors, natural selection has exploited variations on this fractal theme to produce the incredible variety of biological form and function’, but there were severe geometric and physical constraints on metabolic processes.’
    “The conclusion here is inescapable, that the driving force for these invariant scaling laws cannot have been natural selection. It’s inconceivable that so many different organisms, spanning different kingdoms and phyla, may have blindly ‘tried’ all sorts of power laws and that only those that have by chance ‘discovered’ the one-quarter power law reproduced and thrived.”

    Note 1: Quotations from Jerry Fodor and Massimo Piatelli-Palmarini, What Darwin Got Wrong (London: Profile Books, 2010), p. 78-79.
    http://post-darwinist.blogspot.....s-can.html

    Thanks for alerting me as to the context, I will now use the full context of the quote since it gets my point across much more effectively.

    You are hallucinating if you think random mutations breaking things, so as to confer a temporary benefit, is a ‘optimizing capability’ for natural selection. ,,, Can I come over to your house and demonstrate such ‘optimizing capability’ on your car and furniture??? 🙂 I’m sure you would be none too impressed with my ‘optimization’ results once I was done!

  18. 18
    Zachriel says:

    fifthmonarchyman: the quote stands as to its intent and integrity

    We assume, then, you will correct your quote-mine.

    Fodor & Piattelli-Palmarini: “The conclusion here is inescapable, that the driving force for these invariant scaling laws cannot have been natural selection. It’s inconceivable that so many different organisms, spanning different kingdoms and phyla, may have blindly ‘tried’ all sorts of power laws and that only those that have by chance ‘discovered’ the one-quarter power law reproduced and thrived.”

    The power-law is not a binary condition, but can vary continuously. As organisms evolve, they will tend towards the most energy efficient solutions. This results in a fourth-power law due to the fractal nature of distribution networks.

    fifthmonarchyman: You are hallucinating if you think random mutations breaking things, so as to confer a temporary benefit, is a ‘optimizing capability’ for natural selection.

    We can directly observe natural selection and its ability to move populations towards optimal solutions. For instance, the beaks of Darwin’s finches evolve in response to the local food supply.

  19. 19
    bornagain77 says:

    Zach, you have no evidence that natural selection can choose optimal 4 dimensional power scaling, you merely have a belief. I disagree with your belief and have evidence to back me up, whereas you do not! For instance, as to your example “the beaks of Darwin’s finches evolve in response to the local food supply”

    It might surprise trollish you to know that finch beak variation is evidence for design, not Darwinism:

    Darwin’s Finches Show Rule-Constrained Variation in Beak Shape – June 10, 2014
    Excerpt: A simple yet powerful mathematical rule controls beak development, Harvard scientists find, while simultaneously preventing beaks from evolving into something else.,,,
    We find in Darwin’s finches (and all songbirds) an internal system, controlled by a non-random developmental process. It is flexible enough to allow for variation, but powerful enough to constrain the beak to its basic form (a conical shape modulated by scaling and shear) so that the rest of the bird’s structures are not negatively affected. Beak development is controlled by a decay process that must operate at a particular rate. It’s all very precise, so much so that it could be modeled mathematically.,,,
    The very birds that have long been used as iconic examples of natural selection become, on closer examination, paragons of intelligent design.
    http://www.evolutionnews.org/2.....86581.html

    Epigenetics and the Evolution of Darwin’s Finches – 2014
    Excerpt: The prevailing theory for the molecular basis of evolution (Neo-Darwinism) involves genetic mutations that ultimately generate the heritable phenotypic variation on which natural selection acts. However, epigenetic (Non-Darwinian) transgenerational inheritance of phenotypic variation may also play an important role in evolutionary change.,,,
    Genome-wide alterations in genetic mutations using copy number variation (CNV) were compared with epigenetic alterations associated with differential DNA methylation regions (epimutations). Epimutations were more common than genetic CNV mutations among the five species; furthermore, the number of epimutations increased monotonically with phylogenetic distance. Interestingly, the number of genetic CNV mutations did not consistently increase with phylogenetic distance.,,,
    http://gbe.oxfordjournals.org/...../1972.full

    The Grants (who studied Darwin’s finches) made a long presentation at Stanford in 2009 on their work. It is available for all to see on the internet. In it they give the game away. All the so called Darwin finches can inner breed. Doesn’t happen much but it does happen and they have viable offspring that reproduce. Here is the link:

    Darwin’s Legacy | Lecture 5 – video
    http://www.youtube.com/watch?v=IMcVY__T3Ho

    To save you some time. Start at about 109:00 and follow Rosemary for a few minutes till at least 112:00. Then go to 146:30 and listen to Peter. Before this is the inane prattle by two of Stanford’s finest who do not understand that the Grants are saying that the whole evolution thing is a crock.

    also of note:

    Darwin ‘Wrong’: Species Living Together Does Not Encourage Evolution – December 20, 2013
    Excerpt: Charles Darwin’s theory of evolution set out in the Origin of Species has been proven wrong by scientists studying ovenbirds.
    Researchers at Oxford University found that species living together do not evolve differently to avoid competing with one another for food and habitats – a theory put forward by Darwin 150 years ago.
    The ovenbird is one of the most diverse bird families in the world and researchers were looking to establish the processes causing them to evolve.
    Published in Nature, the research compared the beaks, legs and songs of 90% of ovenbird species.
    Findings showed that while the birds living together were consistently more different than those living apart, this was the result of age differences. Once the variation of age was accounted for, birds that live together were more similar than those living separately – directly contradicting Darwin’s view.
    The species that lived together had beaks and legs no more different than those living apart,,,
    ,,,there is no shortage of evidence for competition driving divergent evolution in some very young lineages. But we found no evidence that this process explains differences across a much larger sample of species.,,,
    He said that the reasons why birds living together appear to evolve less are “difficult to explain”,,,
    http://www.ibtimes.co.uk/darwi.....on-1429927

  20. 20
    Zachriel says:

    The quotes in our previous comment should have been attributed to bornagain77.

    bornagain77: you have no evidence that natural selection can choose optimal 4 dimensional power scaling

    We have evidence of natural selection, including direct observations. We can show that the power-law is consistent with selection for energy efficiency.

    bornagain77: Darwin’s Finches Show Rule-Constrained Variation in Beak Shape

    The change in beak shapes in each generation are determined by natural selection. See Grant & Grant, Natural Selection in a Population of Darwin’s Finches, The American Naturalist 1988.

    bornagain77: A simple yet powerful mathematical rule controls beak development, Harvard scientists find

    The study found a relationship between the scale and shear of beaks, probably due to how developmental genes are expressed, but the beak which is found in each generation is still determined by natural selection. See Mallarino, Closely related bird species demonstrate flexibility between beak morphology and underlying developmental programs, Proceedings of the National Academy of Sciences 2012.

  21. 21
    Silver Asiatic says:

    rvb8

    After all, if it’s designed by humans we know all we need to know and there is no further motivation to question.

    Have you ever been interested in art or music or poetry? If so, you’ll know there’s a lot to explore even though we know it was designed.

    Being god would be so dull, I thank god everyday I’m not her.

    If you don’t believe in God, then someone or something else will take the spot of your most loved, highest and supreme goal or entity.

  22. 22
    bornagain77 says:

    Zach, you have no evidence that Neo-Darwinian evolution can create anything. Whereas I have abundant evidence that neo-Darwinian processes are excellent at breaking things.

    actually the changes in finch beaks are shown to be due to genetic and epigenetic factors. For you to state that Natural selection ‘determined’ fink beak variation is to not understand, or to purposely obscure, the relationship between cause and effect.

    I cited a lecture by the Grants in 2009, so please see that lecture before you presume to reference me to a paper of theirs from 1988 that may contradict what they stated in that lecture.

    Developmental genes do not support Darwinism Zach, in fact they are powerful evidence against Darwinism. see the Meyer-Marshall debate on developmental gene regulatory networks.

    Once again, you have refused to acknowledge any of the substantive points raised against neo-Darwinism and restated already refuted points as if they were not already addressed. ,,, As even the ever patient Dr. Giem recently commented, you are troll with no intent on ever being honest to the evidence. That you could make even Dr. Giem caste your credibility into the dumpster as worthless should make you realize how you look to other people on UD.

    Hopefully someday you will become honest with yourself and others before you die and have to face the truth.

    Of note:

    Dr. Giem has a new video lecture up:
    Biological Information – Criticizing ENCODE 12-13-2014 by Paul Giem – video
    https://www.youtube.com/watch?v=zhlFJO1WqVk

  23. 23
    Joe says:

    The change in beak shapes in each generation are determined by natural selection.

    Pure propaganda.

  24. 24
    Zachriel says:

    bornagain77: you have no evidence that Neo-Darwinian evolution can create anything

    We weren’t discussing evolution “creating anything”, but optimizing across a continuum.

    bornagain77: actually the changes in finch beaks are shown to be due to genetic and epigenetic factors.

    Without selection, they don’t change. Selection is what determines which genetic factors predominate in the next generation.

    bornagain77: I cited a lecture by the Grants in 2009, so please see that lecture before you presume to reference me to a paper of theirs from 1988 that may contradict what they stated in that lecture.

    We watched the section you recommended. Grant says “Divergence in morphology through the tracking of environmental change by natural selection”. She also discusses reproductive isolation, which is not complete, and the conditions under which to expect hybridization. That’s standard standard evolutionary biology. It’s so standard, you’ll find it in Darwin 1859.

  25. 25
    tjguy says:

    rvb8 @

    The incremental changes observed in the lab are perfectly sufficient over vast periods of time.

    Yes, we all know this is part of the evolutionary statement of faith. So lets be clear here. Regardless of how strongly you believe this, it is nothing more than your opinion. Stating it as if it is fact does not make it fact.

    I can also understand why you don’t like the term Cambrian Explosion. But you know, I don’t think there is anyone even just a little familiar with science who thinks it was a literal explosion. But the problem for evolutionists is that in the evolutionary framework of time, it looks like an explosion. Meyers has done a good job (IMO) of explaining why it was indeed an explosion and why it caused Darwin to doubt. This is indeed still a problem for neo-darwinism.

    Of course, since we are dealing with history here, we cannot run an experiment to show that the Cambrian Explosion is actually damning evidence against neo-darwinian evolution. But looking at the data, that is how we see it and again, Meyers has done a good job of explaining the reasoning behind that view.

    Your interpretation obviously will differ, but that is to be expected since you approach the data and interpret it through a different worldview and scientific framework than we do.

  26. 26
    Zachriel says:

    tjguy: Stating it as if it is fact does not make it fact.

    No, but for it to be true, observed rates of evolution have to be at least as great as the faster inferred historical rate of evolution. And, indeed, observed evolution is much much faster than anything in the historical record, including during the Cambrian Explosion..

  27. 27
    Moose Dr says:

    Zachriel, “indeed, observed evolution is much much faster than anything in the historical record” I think that evolution needs to be divided between “change in allele frequency” (natural selection) and “new data” (mutations). I see no reason to doubt that selection (especially human guided selection) can rebalance the available alleles to produce very unique seeming organisms (tea cup dogs from wolf, for instance*) in very short order.

    The second thing that needs to be factored out is “neutral theory” class mutations. My view of “neutral theory” is that many mutations get a response of “don’t care” from natural selection — they are neither particularly beneficial nor particularly deleterious. Neutral theory, it seems to me, is pretty good at making new alleles for NS to work on. However, to create new forms we need mutations that are, at least within certain circumstances, beneficial — not neutral.

    I know that the “neutral theory” proponents suggest that neutral theory alone is adequate to explain the number of mutations that separate humans from chimps. I don’t buy their hypothesis because I think that there are lots of mutations that haven’t been considered within that context, but hey.

    Do you really contend that there have been enough contextually beneficial mutations to account for the cambrian explosion? Do you have real data to confirm this?

    *I am sure that a few mutations are required to get there from here, but mostly we’re seeing change in allele frequency.

  28. 28
    bornagain77 says:

    Zach as to: “We weren’t discussing evolution “creating anything”, but optimizing across a continuum.”

    You have no evidence for unguided processes doing anything of interest. Especially when cell mediated changes to the genome are subtracted from your just so story telling. Whereas, we do have abundant evidence for unguided random material processes breaking things, i.e. compromising optimization!

    Selection as you are using it could just as well be stated, whatever survives, survives,, i.e. lucky us. Moreover, if evolution were actually the truth about how all life came to be on Earth then the only ‘life’ that would be around would be extremely small organisms with the highest replication rate, and with the most mutational firepower, since only they would be the fittest to survive in the dog eat dog world where blind pitiless evolution rules and only the ‘fittest’ are allowed to survive. The logic of this is nicely summed up here:

    Richard Dawkins interview with a ‘Darwinian’ physician goes off track – video
    Excerpt: “I am amazed, Richard, that what we call metazoans, multi-celled organisms, have actually been able to evolve, and the reason [for amazement] is that bacteria and viruses replicate so quickly — a few hours sometimes, they can reproduce themselves — that they can evolve very, very quickly. And we’re stuck with twenty years at least between generations. How is it that we resist infection when they can evolve so quickly to find ways around our defenses?”
    http://www.evolutionnews.org/2.....62031.html

    i.e. Since successful reproduction is all that really matters on a neo-Darwinian view of things, how can anything but successful reproduction be realistically ‘selected’ for? Any other function besides reproduction, such as sight, hearing, thinking, etc.., would be highly superfluous to the primary criteria of successfully reproducing, and should, on a Darwinian view, be discarded as so much excess baggage since it would, sooner or later, slow down successful reproduction. But that is not what we find. Indeed, instead of eating us, time after time these different types of microbial life are found to be helping us in essential ways that have nothing to do with their individual ability to successfully reproduce,,,

    NIH Human Microbiome Project defines normal bacterial makeup of the body – June 13, 2012
    Excerpt: Microbes inhabit just about every part of the human body, living on the skin, in the gut, and up the nose. Sometimes they cause sickness, but most of the time, microorganisms live in harmony with their human hosts, providing vital functions essential for human survival.
    http://www.nih.gov/news/health.....gri-13.htm

    We are living in a bacterial world, and it’s impacting us more than previously thought – February 15, 2013
    Excerpt: We often associate bacteria with disease-causing “germs” or pathogens, and bacteria are responsible for many diseases, such as tuberculosis, bubonic plague, and MRSA infections. But bacteria do many good things, too, and the recent research underlines the fact that animal life would not be the same without them.,,,
    I am,, convinced that the number of beneficial microbes, even very necessary microbes, is much, much greater than the number of pathogens.”
    http://phys.org/news/2013-02-b.....tml#ajTabs

    Moreover, you forgot to mention that All the so called Darwin finches can inner breed. Doesn’t happen much but it does happen and they have viable offspring that reproduce. This is not what Darwinists were claiming in 2009:

    Wired Science: One Long Bluff – Refuting a recent finch speciation claim – Jonathan Wells – Nov. 2009
    Excerpt: “Does the report in Wired Science mean that “biologists have witnessed that elusive moment when a single species (of Galapagos finch) splits in two?” Absolutely not.”
    http://www.evolutionnews.org/2.....bluff.html

    Thus once again Zach, you are found to be severely disingenuous as to honestly evaluating Darwinism. ,,, I believe Dr. Giem’s analysis of you being a troll is spot on!

  29. 29
    Zachriel says:

    Moose Dr: I see no reason to doubt that selection (especially human guided selection) can rebalance the available alleles to produce very unique seeming organisms (tea cup dogs from wolf, for instance*) in very short order.

    *I am sure that a few mutations are required to get there from here, but mostly we’re seeing change in allele frequency.

    It certainly takes mutations to turn a wolf into a tea cup dog. However, you are correct that selection can quickly work through existing variations.

    Moose Dr: Do you really contend that there have been enough contextually beneficial mutations to account for the cambrian explosion?

    There was certainly much more than mutation involved, including genomic rearrangements. The evolution of the metazoan toolkit was probably the primary innovation. That was apparently developed largely before the Cambrian Explosion.

    There’s another thread on the Avian Explosion. There was a similar pattern. Most of the adaptation were already in place in the theropod lineage before the Avian Explosion. As the saying goes, it took years to become an overnight success.

  30. 30
    bornagain77 says:

    Interview with Wolf-Ekkehard Lönnig – Mar 22, 2014
    Excerpt: Richard Dawkins and many other evolutionary biologists (claim) that dog breeds prove macroevolution. However, virtually all the dog breeds are generated by losses or disturbances of gene functions and/or developmental processes. Moreover, all the three subfamilies of the family of wild dogs (Canidae) appear abruptly in the fossil record.
    http://dippost.com/2014/03/22/.....rd-lonnig/

    podcast – On this episode of ID the Future, Casey Luskin talks with geneticist Dr. Wolf-Ekkehard Lönnig about his recent article on the evolution of dogs. Casey and Dr. Lönnig evaluate the claim that dogs somehow demonstrate macroevolution.
    http://intelligentdesign.podom.....1_14-08_00
    Part 2: Dog Breeds: Proof of Macroevolution?
    http://intelligentdesign.podom.....7_07-08_00

    The Dog Delusion – October 30, 2014
    Excerpt: In his latest book, geneticist Wolf-Ekkehard Lönnig of the Max Planck Institutes in Germany takes on the widespread view that dog breeds prove macroevolution.,,, He shows in great detail that the incredible variety of dog breeds, going back in origin several thousand years ago but especially to the last few centuries, represents no increase in information but rather a decrease or loss of function on the genetic and anatomical levels.
    Michael Behe writes:
    “Dr. Lönnig shows forcefully that one of the chief examples Darwinists rely on to convince the public of macroevolution — the enormous variation in dogs — actually shows the opposite. Extremes in size and anatomy come at the cost of broken genes and poor health. Even several gene duplications were found to interfere strongly with normal growth and development as is also often the case in humans. So where is the evidence for Darwinian evolution now?”
    The science here is indeed solid. Intriguingly, Lönnig’s prediction from 2013 on starch digestion in wolves has already been confirmed in a study published this year.,,,
    http://www.evolutionnews.org/2.....90751.html

  31. 31
    Zachriel says:

    bornagain77: You have no evidence for unguided processes doing anything of interest.

    As Moose Dr pointed out, natural selection can work through existing variation quite quickly, which can ” rebalance the available alleles”.

    bornagain77: Selection as you are using it could just as well be stated, whatever survives, survives,, i.e. lucky us.

    Actually, what Grant & Grant showed was the relationship between adaptation and environmental conditions.

    bornagain77: Moreover, if evolution were actually the truth about how all life came to be on Earth then the only ‘life’ that would be around would be extremely small organisms with the highest replication rate, and with the most mutational firepower, since only they would be the fittest to survive in the dog eat dog world where blind pitiless evolution rules and only the ‘fittest’ are allowed to survive.

    Heh. You forgot that dog eats rabbit, and worm eats bacteria.

  32. 32
    bornagain77 says:

    evolution evolved a toolkit so evolution could evolve?

    Its almost as if evolution had foresight and agency!

  33. 33
    bornagain77 says:

    You have no evidence for unguided processes doing anything of interest especially when you subtract cell mediated processes from your just so story telling (J Shapiro).

    “Heh. You forgot that dog eats rabbit, and worm eats bacteria.”

    heh, you forgot that successful reproduction is all that really matters for ‘selection’ to occur, In that regards bacteria outclass all other life forms combined and should have eaten everything, including atheistic trolls, long ago, but they did not. Darwinists have no reason why this should be so!

  34. 34
    Zachriel says:

    bornagain77: evolution evolved a toolkit so evolution could evolve?

    Evolution precedes the metazoan toolkit. Small changes in regulatory systems resulted in a network of adaptations, many of which predate metazoa. See Erwin, Early origin of the bilaterian developmental toolkit, Philosophical Transactions B 2009.

    bornagain77: heh, you forgot that successful reproduction is all that really matters for ‘selection’ to occur, In that regards bacteria outclass all other life forms combined and should have eaten everything

    Apparently not. Worms eat bacteria, for instance. ETA: For that matter, humans eat bacteria.
    http://kyleahealth.com/wp-cont.....Yogurt.jpg

  35. 35
    bornagain77 says:

    Zach, every toolkit was built by someone with intelligence. To say evolution built a toolkit so as to enable evolution is to endow evolution with agency, even foresight. Moreover, the illegitimate highjacking of words implying ‘agency’ by Darwinists is rampant:

    Stephen Talbott has clearly pointed out, a major problem with Darwinian explanations is how to describe the complexities of life without illegitimately using terminology that invokes agency,,,

    The ‘Mental Cell’: Let’s Loosen Up Biological Thinking! – Stephen L. Talbott – September 9, 2014
    Excerpt: Many biologists are content to dismiss the problem with hand-waving: “When we wield the language of agency, we are speaking metaphorically, and we could just as well, if less conveniently, abandon the metaphors”.
    Yet no scientist or philosopher has shown how this shift of language could be effected. And the fact of the matter is just obvious: the biologist who is not investigating how the organism achieves something in a well-directed way is not yet doing biology, as opposed to physics or chemistry. Is this in turn just hand-waving? Let the reader inclined to think so take up a challenge: pose a single topic for biological research, doing so in language that avoids all implication of agency, cognition, and purposiveness1.
    One reason this cannot be done is clear enough: molecular biology — the discipline that was finally going to reduce life unreservedly to mindless mechanism — is now posing its own severe challenges. In this era of Big Data, the message from every side concerns previously unimagined complexity, incessant cross-talk and intertwining pathways, wildly unexpected genomic performances, dynamic conformational changes involving proteins and their cooperative or antagonistic binding partners, pervasive multifunctionality, intricately directed behavior somehow arising from the interaction of countless players in interpenetrating networks, and opposite effects by the same molecules in slightly different contexts. The picture at the molecular level begins to look as lively and organic — and thoughtful — as life itself.
    http://natureinstitute.org/txt.....ell_23.htm

    This working biologist agrees completely with Talbott:

    Life, Purpose, Mind: Where the Machine Metaphor Fails – Ann Gauger – June 2011
    Excerpt: I’m a working biologist, on bacterial regulation (transcription and translation and protein stability) through signalling molecules, ,,, I can confirm the following points as realities: we lack adequate conceptual categories for what we are seeing in the biological world; with many additional genomes sequenced annually, we have much more data than we know what to do with (and making sense of it has become the current challenge); cells are staggeringly chock full of sophisticated technologies, which are exquisitely integrated; life is not dominated by a single technology, but rather a composite of many; and yet life is more than the sum of its parts; in our work, we biologists use words that imply intentionality, functionality, strategy, and design in biology–we simply cannot avoid them.
    Furthermore, I suggest that to maintain that all of biology is solely a product of selection and genetic decay and time requires a metaphysical conviction that isn’t troubled by the evidence. Alternatively, it could be the view of someone who is unfamiliar with the evidence, for one reason or another. But for those who will consider the evidence that is so obvious throughout biology, I suggest it’s high time we moved on. – Matthew
    http://www.evolutionnews.org/2.....nt-8858161

  36. 36
    Silver Asiatic says:

    i.e. Since successful reproduction is all that really matters on a neo-Darwinian view of things, how can anything but successful reproduction be realistically ‘selected’ for? Any other function besides reproduction, such as sight, hearing, thinking, etc.., would be highly superfluous to the primary criteria of successfully reproducing, and should, on a Darwinian view, be discarded as so much excess baggage since it would, sooner or later, slow down successful reproduction. But that is not what we find. Indeed, instead of eating us, time after time these different types of microbial life are found to be helping us in essential ways that have nothing to do with their individual ability to successfully reproduce,,,

    Nice summary, BA. It remains unanswered.

  37. 37
    bornagain77 says:

    Like the good troll you are, you are purposely missing the point with bacteria. So what if worms and humans eat bacteria? The point is that if evolution, red and tooth and claw, were actually the truth for how life came to be on this earth, then bacteria, since they far outclass metazoans in their ability to successfully reproduce, then we should not be around since they should have exploited us as a food source long ago! Yet, as you yourself pointed out, we can eat probiotics that are beneficial to us with impunity:

    Richard Dawkins interview with a ‘Darwinian’ physician goes off track – video
    Excerpt: “I am amazed, Richard, that what we call metazoans, multi-celled organisms, have actually been able to evolve, and the reason [for amazement] is that bacteria and viruses replicate so quickly — a few hours sometimes, they can reproduce themselves — that they can evolve very, very quickly. And we’re stuck with twenty years at least between generations. How is it that we resist infection when they can evolve so quickly to find ways around our defenses?”
    http://www.evolutionnews.org/2.....62031.html

  38. 38
    Zachriel says:

    bornagain77: To say evolution built a toolkit so as to enable evolution is to endow evolution with agency, even foresight.

    No. Each step in the evolution of the toolkit had to be advantageous for the organisms involved, including endoderm formation, anterior/posterior patterning, segmentation, and distal-less appendage formation.

  39. 39
    Zachriel says:

    bornagain77: So what if worms and humans eat bacteria? The point is that if evolution, red and tooth and claw, were actually the truth for how life came to be on this earth, then bacteria, since they far outclass metazoans in their ability to successfully reproduce, then we should not be around:

    Successful reproduction depends on access to resources. Bacteria are extraordinarily successful, but this means they become a resource for other organisms. Bacterivores evolved to take advantage of this resource. There’s nothing contradictory about that.

  40. 40
    bornagain77 says:

    Zach, there is EVERYTHING contradictory about it!

    The Microbial Engines That Drive Earth’s Biogeochemical Cycles – Falkowski 2008
    Excerpt: Microbial life can easily live without us; we, however, cannot survive without the global catalysis and environmental transformations it provides. –
    Paul G. Falkowski – Professor Geological Sciences – Rutgers
    http://www.genetics.iastate.edu/delong1.pdf

    Doubting Darwin: Algae Findings Surprise Scientists – April 28, 2014
    Excerpt: One of Charles Darwin’s hypotheses posits that closely related species will compete for food and other resources more strongly with one another than with distant relatives, because they occupy similar ecological niches. Most biologists long have accepted this to be true.
    Thus, three researchers were more than a little shaken to find that their experiments on fresh water green algae failed to support Darwin’s theory,,,
    “It was completely unexpected,” says Bradley Cardinale,,,, “When we saw the results, we said ‘this can’t be.”‘ We sat there banging our heads against the wall. Darwin’s hypothesis has been with us for so long, how can it not be right?”
    The researchers ,,,— were so uncomfortable with their results that they spent the next several months trying to disprove their own work. But the research held up.,,,
    The scientists did not set out to disprove Darwin, but, in fact, to learn more about the genetic and ecological uniqueness of fresh water green algae so they could provide conservationists with useful data for decision-making. “We went into it assuming Darwin to be right, and expecting to come up with some real numbers for conservationists,” Cardinale says. “When we started coming up with numbers that showed he wasn’t right, we were completely baffled.”,,,
    Darwin “was obsessed with competition,” Cardinale says. “He assumed the whole world was composed of species competing with each other, but we found that one-third of the species of algae we studied actually like each other. They don’t grow as well unless you put them with another species. It may be that nature has a heck of a lot more mutualisms than we ever expected.,,,
    Maybe Darwin’s presumption that the world may be dominated by competition is wrong.”
    http://www.livescience.com/452.....f-bts.html

  41. 41
    bornagain77 says:

    Zach, you have no evidence of Darwinian evolution, especially when the ‘genetic toolkits’ (cell mediated processes) are removed from your just so story telling, ever producing anything of interest. Whereas we have abundant evidence that unguided processes are excellent at breaking things!

  42. 42
    Zachriel says:

    bornagain77: Microbial life can easily live without us; we, however, cannot survive without the global catalysis and environmental transformations it provides.

    Of course. Animals, in particular, are dependent on other organisms for nutrition. That doesn’t support your claim that evolution would predict nothing besides bacteria. Frankly, the claim is just silly as the theory was proposed to explain diversity.

  43. 43
    bornagain77 says:

    Actually, what is beyond silly, indeed what borders on mental illness, is that you claim to believe that unguided material processes, unguided processes that are empirically shown to consistently break things, created the unfathomed functional integrated complexity in life. A level of integrated functional complexity that our best computer programmers and engineers can only dream of accurately modelling!

    “Complexity Brake” Defies Evolution – August 2012
    Excerpt: “This is bad news. Consider a neuronal synapse — the presynaptic terminal has an estimated 1000 distinct proteins. Fully analyzing their possible interactions would take about 2000 years. Or consider the task of fully characterizing the visual cortex of the mouse — about 2 million neurons. Under the extreme assumption that the neurons in these systems can all interact with each other, analyzing the various combinations will take about 10 million years…, even though it is assumed that the underlying technology speeds up by an order of magnitude each year.”,,,
    Even with shortcuts like averaging, “any possible technological advance is overwhelmed by the relentless growth of interactions among all components of the system,” Koch said.
    to read more go here:
    http://www.evolutionnews.org/2.....62961.html

    Systems biology: Untangling the protein web – July 2009
    Excerpt: Vidal thinks that technological improvements — especially in nanotechnology, to generate more data, and microscopy, to explore interaction inside cells, along with increased computer power — are required to push systems biology forward. “Combine all this and you can start to think that maybe some of the information flow can be captured,” he says. But when it comes to figuring out the best way to explore information flow in cells, Tyers jokes that it is like comparing different degrees of infinity. “The interesting point coming out of all these studies is how complex these systems are — the different feedback loops and how they cross-regulate each other and adapt to perturbations are only just becoming apparent,” he says. “The simple pathway models are a gross oversimplification of what is actually happening.”
    http://www.nature.com/nature/j.....0415a.html

    Moreover, Why in blue blazes should the evolution of bacteria care one iota if higher organisms exist? Random mutations and high reproductive rates could care less if some slower reproducing metazoan with a lower mutation rate got steamrolled in the process of the evolution of bacteria exploiting some new food source.
    But that is not what we see. For instance,

    Doug Axe: Lignin & the Coherent Design of the Ecosystem – podcast
    Excerpt: Lignin provides a paradoxical case for the Darwinian method of evolution, but fits perfectly into a design oriented scientific paradigm. Thirty percent of non-fossil organic carbon on the planet is lignin, so in a Darwinian world, something should have developed the ability to consume lignin–but it hasn’t. Lignin binds together and protects plant cellulose, which is vital to all types of large plant life; “The peculiar properties of lignin therefore make perfect sense when seen as part of a coherent design for the entire ecosystem of our planet.”
    http://www.idthefuture.com/201.....ent_d.html

    Lignin breakthroughs serve as GPS for plant research – March 11, 2014
    Excerpt: Lignin, an important and complex polymer responsible for plant growth and development, provides mechanical strength and water transport that enables some trees to grow 100 meters tall.,,,
    This work in the new area of plant systems biology, integrating biology, chemistry and engineering, sets a new standard for understanding any complex biological feature in the future.,,,
    Over many years of intensive research, the interdisciplinary team led by Chiang purified 21 pathway enzymes and analyzed 189 different parameters related to lignin formation. With help from engineering colleagues Cranos Williams and Joel Ducoste, the team developed models that predict how pathway enzymes affect lignin content and composition.
    http://phys.org/news/2014-03-l.....s-gps.html

    Yet, despite the fact that Darwinian evolution was somehow super genius enough to construct a biosynthetic pathway for lignin, that took years of intensive research by a interdisciplinary team to get a basic understanding of, Darwinian evolution is somehow too dumb to figure out the much easier biosynthetic pathway of how to tap lignin as an energy source??? And if you believe that I got some ocean front property for you in Arizona!

    Supplemental note on the extreme fine tuning of microbial life for metazoans:

    Engineering and Science Magazine – Caltech – March 2010
    Excerpt: “Without these microbes, the planet would run out of biologically available nitrogen in less than a month,” Realizations like this are stimulating a flourishing field of “geobiology” – the study of relationships between life and the earth. One member of the Caltech team commented, “If all bacteria and archaea just stopped functioning, life on Earth would come to an abrupt halt.” Microbes are key players in earth’s nutrient cycles. Dr. Orphan added, “…every fifth breath you take, thank a microbe.”
    http://www.creationsafaris.com.....#20100316a

    Verse and Music:

    Isaiah 9:6
    For to us a child is born, to us a son is given, and the government will be on his shoulders. And he will be called Wonderful Counselor, Mighty God, Everlasting Father, Prince of Peace.

    Do You Hear What I Hear? – Carrie Underwood
    https://www.youtube.com/watch?v=Ad7KU9bCTAM

  44. 44
    Moose Dr says:

    Zachriel, “That was apparently developed largely before the Cambrian Explosion.”

    I have reason to question the “before the cambrian there was a bunch of lost details” hypothesis. This, of course, was Darwin’s hypothesis as well. However, I understand that there are some well preserved very early cambrian fossil records, storing extensive soft tissue details. These fossil finds show sponges, and no other animal life. I guess it was possible that the particular finds were in regions that showed painful subsets of the variety that was available a the time. However, fossil beds in the late precambrian seem to show no animal life at all.

    In what kind of organism(s) are you proposing that this “metazoan toolkit” was housed?

  45. 45
    Moose Dr says:

    BA77, “Darwinian evolution is somehow too dumb to figure out the much easier biosynthetic pathway of how to tap lignin as an energy source?”

    Yes, I have encountered the lignin theory before. Highly interesting. It is the ultimate example of a Darwinian impossibility — true altruism. I will sacrifice my own short term benefit for the long term benefit of others. While we are talking about the long term benefit of my own species, the length of the term is far too far away for natural selection to analyze. Why would an organism give up such a mighty food source, when it could probably run a few million years before producing radical ecological damage by consuming it?

  46. 46
    Mapou says:

    Zacky:

    We can directly observe natural selection and its ability to move populations towards optimal solutions. For instance, the beaks of Darwin’s finches evolve in response to the local food supply.

    This is a blatant lie and a stupid one at that. The adaptive changes observed in finches are due to epigenetics, a genetically pre-programmed (i.e., designed) mechanism that changes a miniscule percentage of the organism’s genes in response to certain environmental changes. Natural selection has nothing to do with it.

  47. 47
    Zachriel says:

    bornagain77: you claim to believe that unguided material processes, unguided processes that are empirically shown to consistently break things, created the unfathomed functional integrated complexity in life.

    Whenever you don’t have an answer you wave your hands and try to change the subject. The question concerned why more complex organisms can exist when bacteria are the most efficient replicators. If there are a lot of bacteria, then eating bacteria becomes a viable niche. Bacterivores may reproduce more slowly, but that doesn’t matter, as long as they can survive and reproduce. It’s like saying you can’t have foxes because rabbits reproduce more quickly.

    Moose Dr: I have reason to question the “before the cambrian there was a bunch of lost details” hypothesis.

    Organisms form an objective nested hierarchy, which, along with the fossil succession, provides historical ordering of events. If we then look at colonial unicellular organisms and primitive metazoans, this can provide us a glimpse of when the toolkit evolved. If the genes are shared in choanoflagellate, then they likely developed before metazoa. See Erwin, Early origin of the bilaterian developmental toolkit, Philosophical Transactions B 2009.

    Moose Dr: However, I understand that there are some well preserved very early cambrian fossil records, storing extensive soft tissue details. These fossil finds show sponges, and no other animal life.

    Complex multicellular organisms appeared in the Ediacara preceding the Cambrian, including Kimberella, a genus bilateria.

    Moose Dr: In what kind of organism(s) are you proposing that this “metazoan toolkit” was housed?

    In colonial unicellular organisms, including signaling pathways.

    bornagain77: Darwinian evolution is somehow too dumb to figure out the much easier biosynthetic pathway of how to tap lignin as an energy source?

    Huh? Lignin is used as an energy source by fungi, including in the guts of wood-eating beetles.

    Mapou: The adaptive changes observed in finches are due to epigenetics, a genetically pre-programmed (i.e., designed) mechanism that changes a miniscule percentage of the organism’s genes in response to certain environmental changes.

    Apparently not, based on close observations of Darwin’s finches. The changes in beak size are shown to be due to reproductive advantages from generation to generation, and can be traced to specific genes, such as bmp4.

  48. 48
    bornagain77 says:

    Zachriel, you once again are a shining example of a ‘troll’ who refuses to honestly address the merits of the argument and tries to push his agenda by any deceptive means possible!.

    The argument is clear,,,

    Richard Dawkins interview with a ‘Darwinian’ physician goes off track – video
    Excerpt: “I am amazed, Richard, that what we call metazoans, multi-celled organisms, have actually been able to evolve, and the reason [for amazement] is that bacteria and viruses replicate so quickly — a few hours sometimes, they can reproduce themselves — that they can evolve very, very quickly. And we’re stuck with twenty years at least between generations. How is it that we resist infection when they can evolve so quickly to find ways around our defenses?”
    http://www.evolutionnews.org/2.....62031.html

    Microbial life can easily live without us; we, however, cannot survive without the global catalysis and environmental transformations it provides. –
    Paul G. Falkowski – Professor Geological Sciences – Rutgers

    There simply is no coherent explanation from Darwinists for why this should be so!

    As to lignin:

    The Lignin Enigma By Ann Gauger – July 2012
    Excerpt: Why should such an abundant resource go unexploited? Darwinian evolution has apparently failed to evolve “a relatively modest innovation—growth on lignin”—over 400 million years, even though many other spectacular innovations—nodulation (a symbiotic relationship between plants and bacteria that permits the fixation of nitrogen), symbiotic pollination systems (between plants, hummingbirds, and bees), and the appearance of carnivorous plants—all appeared during the same time period, and complex biochemical pathways such as C4 photosynthesis have apparently evolved independently many times.
    How can one mechanism [Darwinism] have been at the same time so effective and so ineffective? That tension vanishes completely when the design perspective is adopted. Terrestrial animal life is crucially dependent on terrestrial plant life, which is crucially dependent on soil, which is crucially dependent on the gradual photo- and biodegradation of lignin. Fungi accomplish the biodegradation, and the surprising fact that it costs them energy to do so keeps the process gradual. The peculiar properties of lignin therefore make perfect sense when seen as part of a coherent design for the entire ecosystem.
    http://www.biologicinstitute.o.....nin-enigma

    moreover,,

    Arbuscular Mycorrhizal Fungi Design
    Excerpt: The mutual relationship between vascular plants (flowering plants) and arbuscular mycorrihizal fungi (AMF) is the most prevalent known plant symbiosis. Vascular plants provide sites all along their root systems where colonies of AMF can assemble and feed on the nutrients supplied by the plants. In return, the AMF supply phosphorus, nitrogen, and carbon in molecular forms that the vascular plants can readily assimilate. The (overwhelming) challenge for evolutionary models is how to explain by natural means the simultaneous appearance of both vascular plants and AMF.
    http://www.reasons.org/Arbuscu.....ngiDesign2

    of related note to bacteria not seeing humans as 150 pounds of prime rib waiting to be devoured,,, chemistry is specifically found to be ‘fine-tuned’ for life like human life, not just any type of life:

    The Place of Life and Man in Nature: Defending the Anthropocentric Thesis – Michael J. Denton – February 25, 2013
    Summary (page 11)
    Many of the properties of the key members of Henderson’s vital ensemble —water, oxygen, CO2, HCO3 —are in several instances fit specifically for warm-blooded, air-breathing organisms such as ourselves. These include the thermal properties of water, its low viscosity, the gaseous nature of oxygen and CO2 at ambient temperatures, the inertness of oxygen at ambient temperatures, and the bicarbonate buffer, with its anomalous pKa value and the elegant means of acid-base regulation it provides for air-breathing organisms. Some of their properties are irrelevant to other classes of organisms or even maladaptive. It is very hard to believe there could be a similar suite of fitness for advanced carbon-based life forms. If carbon-based life is all there is, as seems likely, then the design of any active complex terrestrial being would have to closely resemble our own. Indeed the suite of properties of water, oxygen, and CO2 together impose such severe constraints on the design and functioning of the respiratory and cardiovascular systems that their design, even down to the details of capillary and alveolar structure can be inferred from first principles. For complex beings of high metabolic rate, the designs actualized in complex Terran forms are all that can be. There are no alternative physiological designs in the domain of carbon-based life that can achieve the high metabolic activity manifest in man and other higher organisms.
    http://bio-complexity.org/ojs/.....O-C.2013.1

    Privileged Species – How the cosmos is designed for human life – website
    http://privilegedspecies.com/

  49. 49
    Joe says:

    Zachriel thinks that prokayotes aren’t organisms!:

    Organisms form an objective nested hierarchy,

    Prokaryotes do not form an objective nested hierarchy.

    If there are a lot of bacteria, then eating bacteria becomes a viable niche.

    Bacteria can eat bacteria. No need for anything else.

  50. 50
    Zachriel says:

    bornagain77: refuses to address the merits of the argument

    Our discussion started with a claim you made concerning natural selection; “natural selection is not a ‘force’ that pushes, pulls, or creates, anything.” We provided evidence, including direct observation, that natural selection can sort through variations to optimize a function. We responded to your points about how developmental genes control beak morphology.

    Then you pivoted to whether natural selection was a creative force, abandoning your defense of whether it is a force that pushes or pulls. You suggested we watch a portion of Rosemary Grant’s lecture, which you falsely assured us she had said the whole evolution thing is a crock. You then misstated the results of Grant & Grant, saying it was whatever survived survived, when they actually demonstrated a direct relationship between the environment and the balance of traits in the population. They did this by close observation of every individual and mating in the population.

    bornagain77 (quoting Gauger): Fungi accomplish the biodegradation, and the surprising fact that it costs them energy to do so keeps the process gradual.

    The primary benefit of lignin degradation is exposing the cellulose to digestion.

    bornagain77: Vascular plants provide sites all along their root systems where colonies of AMF can assemble and feed on the nutrients supplied by the plants. In return, the AMF supply phosphorus, nitrogen, and carbon in molecular forms that the vascular plants can readily assimilate. The (overwhelming) challenge for evolutionary models is how to explain by natural means the simultaneous appearance of both vascular plants and AMF.

    Not sure why you consider that a problem. However, the actual history is interesting. Fungi are believed to have invaded the land first, utilizing inorganic nutrients and forming a symbiotic relationship with algae. Land plants used the released nutrients, so it became advantageous to harbor the fungi.

  51. 51
    bornagain77 says:

    You provided no evidence for natural selection pushing are pulling, much less optimizing, or creating anything, as Mapou pointed out,,,

    We can directly observe natural selection and its ability to move populations towards optimal solutions. For instance, the beaks of Darwin’s finches evolve in response to the local food supply.

    “This is a blatant lie and a stupid one at that. The adaptive changes observed in finches are due to epigenetics, a genetically pre-programmed (i.e., designed) mechanism that changes a miniscule percentage of the organism’s genes in response to certain environmental changes. Natural selection has nothing to do with it.”

    For you to pretend that you did provide evidence for natural selection doing anything is yet more evidence of your dishonest and trollish nature.

    The fact that Lignin is not exploited as a food source by bacteria, but is digested at a cost of energy is proof for elegant design for the overall ecology of the earth and is certainly not what would be expected on Darwinism.

    Mutually beneficial relationships are unexpected on Darwinism:

    Doubting Darwin: Algae Findings Surprise Scientists – April 28, 2014
    Excerpt: One of Charles Darwin’s hypotheses posits that closely related species will compete for food and other resources more strongly with one another than with distant relatives, because they occupy similar ecological niches. Most biologists long have accepted this to be true.
    Thus, three researchers were more than a little shaken to find that their experiments on fresh water green algae failed to support Darwin’s theory,,,
    “It was completely unexpected,” says Bradley Cardinale,,,, “When we saw the results, we said ‘this can’t be.”‘ We sat there banging our heads against the wall. Darwin’s hypothesis has been with us for so long, how can it not be right?”
    The researchers ,,,— were so uncomfortable with their results that they spent the next several months trying to disprove their own work. But the research held up.,,,
    The scientists did not set out to disprove Darwin, but, in fact, to learn more about the genetic and ecological uniqueness of fresh water green algae so they could provide conservationists with useful data for decision-making. “We went into it assuming Darwin to be right, and expecting to come up with some real numbers for conservationists,” Cardinale says. “When we started coming up with numbers that showed he wasn’t right, we were completely baffled.”,,,
    Darwin “was obsessed with competition,” Cardinale says. “He assumed the whole world was composed of species competing with each other, but we found that one-third of the species of algae we studied actually like each other. They don’t grow as well unless you put them with another species. It may be that nature has a heck of a lot more mutualisms than we ever expected.,,,
    Maybe Darwin’s presumption that the world may be dominated by competition is wrong.”
    http://www.livescience.com/452.....f-bts.html

  52. 52
    Zachriel says:

    bornagain77 (quoting Mapou): We can directly observe natural selection and its ability to move populations towards optimal solutions.

    We provided a citation to direct observations of natural selection. The researchers recorded every individual and mating event, and those finches which had best access to food resources tended to produce more offspring. However, we’d be happy to look at a study which indicates otherwise.

    bornagain77: The fact that Lignin is not exploited as a food source by bacteria, but is digested at a cost of energy is proof for elegant design for the overall ecology of the earth and is certainly not what would be expected on Darwinism.

    Fungi. Fungi break down the lignin to expose the cellulose to digestion. There’s nothing any more unusual about this than a simian expending energy to break open a clam.
    http://i.vimeocdn.com/video/439240440_640.jpg

    bornagain77: Mutually beneficial relationships are unexpected on Darwinism

    That’s a very odd statement to make as Darwin certainly posited symbiotic relationships, such as his prediction of what we call the Darwin moth. See Darwin, On the various contrivances by which orchids are fertilised by insects, 1862. Could it be you misunderstand your own citation?

  53. 53
    bornagain77 says:

    Zach as you have been told before, to postulate natural selection as the cause for an after the fact observation of an effect, (i.e. such as a change in proportions of a population), is to illegitimately switch the whole cause and effect relationship in science. Natural Selection, as it is used by Darwinists, is a superflous narrative gloss that is added on after an observation has been made and tells us nothing as to the actual cause for how the change in a populations actually occurred (which in the case of finches is found to be ‘designed’ epigenetic factors not natural selection!).

    Darwin’s Finches: Answers From Epigenetics by Jeffrey Tomkins, Ph.D. – August 29. 2014
    Excerpt: Just one year prior to this 2014 study,1 the epigenetic basis of speciation was demonstrated in birds in which the progressive geographical spread and ecological patterns of adaptation for a newly introduced songbird species were characterized by differences in DNA methylation patterns, not variation in the actual DNA sequence.2 In contrast, traditional Darwinian evolution alleges that random changes in the DNA itself generate new and useful variants that are then selected by the environment. In reality, researchers are now discovering that organisms can robustly adapt to different ecological niches without major changes in their DNA sequence.,,,
    What underlies this variation in finch beaks? In studies attempting to determine the molecular basis for beak variability in finches, researchers have found that very similar developmental genetic pathways among species can produce markedly different beak shapes.5 So if the genes are essentially the same, then what seems to be the major source of variation? In this current effort, the researchers studied two different factors in the genome. The first were short sections of non-coding DNA sequence that varied in the number of copies—repeated units—called copy number variants or CNVs. In humans, differences in CNVs form the basis for studying forensics and paternity testing. The second factor studied was epigenetically-based, using an analysis of DNA methylation patterns around the genome.
    From these analyses, the researchers found that epigenetics correlated well with increased diversity among species while CNVs, based on actual DNA sequences, did not. In addition, they also undertook a more focused study of the epigenetic profiles of specific genes involved in the morphogenesis of beak shape, immune-system responses, and coloring of the birds. Once again, the epigenetic profiles of the different bird species for all of these gene groups were different while the DNA sequences were nearly identical.
    http://www.icr.org/article/8338/

    Invoking Natural Selection as a cause to an effect is useless, even misleading, as a heuristic in science, since Natural Selection falsely claims to supply a valid explanation as to the actual cause for an effect when it has in fact done no such thing, but was only brought in after the effect was observed as a ‘narrative gloss’:

    Why Do We Invoke Darwin? – Evolutionary theory contributes little to experimental biology – Philip S. Skell -The Scientist – August 29, 2005
    Excerpt: I found that Darwin’s theory had provided no discernible guidance, but was brought in, after the breakthroughs, as an interesting narrative gloss.,,,
    Darwinian explanations for such things are often too supple: Natural selection makes humans self-centered and aggressive – except when it makes them altruistic and peaceable. Or natural selection produces virile men who eagerly spread their seed – except when it prefers men who are faithful protectors and providers. When an explanation is so supple that it can explain any behavior, it is difficult to test it experimentally, much less use it as a catalyst for scientific discovery.
    Darwinian evolution – whatever its other virtues – does not provide a fruitful heuristic in experimental biology.
    http://www.discovery.org/a/2816

    your other responces in your post to lignin and mutually beneficial relations are ‘hand waving’ these insurmountable problems for Darwinism away, and certainly do not address the merits of the arguments against Darwinism. i.e. Your failure to honestly address the evidence is not a concise rebuttal of the argument!

  54. 54
    Zachriel says:

    bornagain77: to postulate natural selection as the cause for an after the fact observation of an effect, (i.e. such as a change in proportions of a population), is to illegitimately switch the whole cause and effect relationship in science.

    In direct observations of natural selection, we have multiple changes in environmental conditions leading to a non-trivial correlation between the environmental conditions and reproductive success. This is not “after the fact”, but a direct observation. In addition, we can support this with studies of artificial selection, where we can directly cause changes in the environment and see changes in reproductive success.

    bornagain77: Natural Selection, as it is used by Darwinists, is a superflous narrative gloss that is added on after an observation is made and tells us nothing as to the actual cause for how the change in a populations actually occurred

    That is incorrect. We can directly observe reproductive success, which determines the composition of the next generation population. That’s called natural selection.

    bornagain77: In contrast, traditional Darwinian evolution alleges that random changes in the DNA itself generate new and useful variants that are then selected by the environment.

    Darwin didn’t know anything about DNA.

    The observation of natural selection in Darwin’s finches is not directly related to the source of genetic variation. Rather, it is the observation that changes in the environment cause changes in reproductive success leading to changes in the population.

    bornagain77 (quoting): In this current effort, the researchers studied two different factors in the genome.

    From the study: “Since environmental factors are known to result in heritable changes in the epigenome, it is possible that epigenetic changes contribute to the molecular basis of the evolution of Darwin’s finches.’

    In other words, epigenetics doesn’t impact the observation of natural selection. It’s a source of phenotypic variation.

    bornagain77: your other responces in your post to lignin and mutually beneficial relations are ‘hand waving’

    How so? You claimed that lignin degradation is not a benefit to the organism. We pointed out that it allows for digestion of cellulose. This is no different in principle than an organism expending energy to open a mussel.
    http://www.youtube.com/watch?v=YQXKyTWMvpM

  55. 55
    bornagain77 says:

    Zach, I’m satisfied that unbiased readers who support ID can now see that you are just chasing your tail in a circle trying to make whatever excuses for Darwinism that you can, and see that you have no interest in being honest to the evidence (i.e. see that you are a troll).

    Thus, I’ll rest my case, since I have better things to do today that point out the fact that your arguments are all circular.

  56. 56
    Zachriel says:

    Unbiased readers can see that we made substantive replies.

  57. 57
    Joe says:

    Educated readers can see that Zachriel hasn’t said anything substantive.

  58. 58
    Mapou says:

    Zacky:

    Unbiased readers can see that we made substantive replies.

    What’s with the “we” crap? You can’t speak for yourself?

  59. 59
    tjguy says:

    http://crev.info/2014/12/astrobiology-has-no-bio/

    This is a great review of current astrobiology. The title is provocative:

    “Astrobiology has no ‘bio'”

    The article begins like this:

    When you take the “bio” out of astrobiology, what do you get?

    Is it still a science?

    and concludes like this:

    Take the “bio” out of astrobiology, and what do you get?

    Astrology—a method of divination.
    Look at these news articles above and explain if you see any real philosophical difference.

    Anyone up for the challenge? Look at the articles reviewed and see if there is a difference between astrobiology and astrology.

    At least 7 articles are highlighted. All promise possible future progress – which is a common theme of articles related to astrobiology. Everything is maybe, could have, might have, is thought to have, perhaps, etc. But statements like that have nothing to do with science if they cannot be tested. It’s no different than believing in a God you can’t see.

    At least there is more evidence for a Creator than there is for alien life when you consider the complexity, the information, inter lapping error correcting codes, nano machinery, software of the cell, fine tuning of the universe, etc.

    it seems to me that believers in a Creator have more justification for their faith than believers in aliens do.

    Sure, there are still many things scientists are exploring in this area, but there will always be things left to explore. It is very possible that science will never solve this problem simply because life does not have a natural origin. So again, all hypotheses should be allowed on the table including the idea of a divine origin for life.

    There’s just no way to rule it out & it could be argued that there is data to support it as stated above,

    so why rule it out?

  60. 60
    DATCG says:

    Zachriel,

    bornagain77: actually the changes in finch beaks are shown to be due to genetic and epigenetic factors.

    (Zachriel responds)
    Without selection, they don’t change. Selection is what determines which genetic factors predominate in the next generation.

    Zachriel, please bare with me.

    Can you more elaborately define “Selection” in this particular example of beak finch sizes and/or “species?”

    What specifically is doing the actual “selection?”

    I’ll check back later today and respond.

  61. 61
    DavidD says:

    DATCG

    “Zachriel, please bare with me.

    Can you more elaborately define “Selection” in this particular example of beak finch sizes and/or “species?”

    What specifically is doing the actual “selection?”

    I’ll check back later today and respond.”

    ——

    Well, don’t hold your breathe and expect a factual or truthful answer minus all the personal bias and cute game playing already being done in this OP thread. Here is a link from earlier this year which provides the best answer I can think of. It comes from Huffington Post and a conversation interview between Susan Mazur and Denis Noble on Natural Selection:

    http://www.huffingtonpost.com/.....84211.html

    Suzan Mazur: “There’s also natural selection, which became a catch-all term. As Richard Lewontin has pointed out, it was intended as a metaphor not to be taken literally by generations of scientists. The range of views about what natural selection is is staggering — a brand, a political term, a political and scientific term, failure to reach biotic potential, physicists are seeing it as part of a larger process now, etc. etc. Things are being majorly redefined.”

    Denis Noble: “You’re putting your finger on a very important point here. And what I just said about the definition of a gene is only one example where I think some philosophical clarity is needed.”

    Suzan Mazur: “Is it the case that there are all sorts of mechanisms at play, some of which have now been identified, that have been previously considered part of natural selection? It seems natural selection is used as a catch-all for a failure to identify what the mechanisms are.”

    _____

    The last sentence really says it all.

    “It seems natural selection is used as a catch-all for a failure to identify what the mechanisms are.”

  62. 62
    Zachriel says:

    DATCG: Can you more elaborately define “Selection” in this particular example of beak finch sizes and/or “species?”

    See Grant & Grant, Natural Selection in a Population of Darwin’s Finches, The American Naturalist 1989.

    The Grants cataloged finches on Isla Genovesa Galápagos over a period of years. There was a climatic event that caused a significant change in the environment, specifically a change in food resources. They showed that “different beak shapes, which influence the birds’ abilities to forage on certain food items, could directly affect the health of the survivors at the end of a dry season, which in turn would influence their ability to compete for territories, to gain mates, and to reproduce at the onset of rains.” They then showed that the beak morphology of the population changed as the environment changed according to the identified fitness advantage. Continued observations have confirmed their initial findings.

    DavidD (citing Denis Noble): In principle, Darwin didn’t refer to any mechanisms.

    That is incorrect. He seems to be referring to mechanisms of variation, which Darwin observed, but didn’t explain.

    DavidD (citing Denis Noble): If there can be selection on variants, then some will survive and some won’t. In some sense this is a necessary truth, isn’t it?

    That’s not natural selection. There are many reasons an organism may survive or die. Natural selection refers to heritable characteristics that provide an advantage or disadvantage in reproduction.

    ETA: The quoted statements was off-hand. The context indicates he does accept natural selection.

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    Joe says:

    There isn’t any evidence that natural selection produced the variety of finches. There is evidence that the variety of finches is due to built-in responses to environmental cues. See “The Evolution Revolution”- for example back in 1967 the US released 100 finches- all exactly the same- on a Pacific atoll. Those finches soon spread to other local islands. 17 years later it was observed that the parent population had already diverged and there were several different finches on the islands- 17 years, and it most likely occurred more rapidly than that.

  64. 64
    Joe says:

    Natural selection refers to heritable characteristics that provide an advantage or disadvantage in reproduction.

    That is incorrect. For it to be natural selection the heritable characteristics have to be accidental, ie not planned, nor directed.

  65. 65
    DATCG says:

    Zachriel,

    thanks, apologies for late response, long day.

    You quoted work done in 1989…

    See Grant & Grant, Natural Selection in a Population of Darwin’s Finches, The American Naturalist 1989.

    The Grants cataloged finches on Isla Genovesa Galápagos over a period of years. There was a climatic event that caused a significant change in the environment, specifically a change in food resources. They showed that “different beak shapes, which influence the birds’ abilities to forage on certain food items, could directly affect the health of the survivors at the end of a dry season, which in turn would influence their ability to compete for territories, to gain mates, and to reproduce at the onset of rains.” They then showed that the beak morphology of the population changed as the environment changed according to the identified fitness advantage. Continued observations have confirmed their initial findings.

    While these are I’m sure meticulous observations on part of the Grants, they are rather vague as to what is doing the Selection.

    Is the Environment responsible for the Selection of beak size according to your response?

  66. 66
    DATCG says:

    DavidD,

    Thanks for the link. Always interested in interviews of scientific community on this subject done by Mazur. Looks like interesting read to save.

  67. 67
    Zachriel says:

    DATCG: Is the Environment responsible for the Selection of beak size according to your response?

    It’s the relationship between the environment and the fitness of beak variants. Roughly, the environment selects among the available variants. As the environment changes, natural selection predicts that this will bring about a directional change in the distribution of traits associated with fitness. Additional observations have confirmed this relationship.

  68. 68
    tjguy says:

    http://creation.com/abiogenesis

    An excerpt from this article:

    But is it possible for biologic life, intelligent or rudimentary, to spontaneously arise over time from material precursors as the advocates of abiogenesis maintain?

    Well, no, it’s not, for a host of reasons. Life runs on coded messages, some of the most complicated messages known to humans. And we haven’t gotten anywhere near the bottom of the complexity of it all. Multiple codes, messages running in different directions with the information multi-layered on the genetic material, self-correction, vast storage mechanisms, postal systems to deliver the messages thither and yon … The list of wonders goes on and on, with more being discovered on a regular basis.

    In all human experience, messages and minds are tied irrevocably together, so that where we find a message we know it is the product of a mind, of an intelligent source. We know that ‘Bobby loves Bindy’ written in sand on a beach, is not and can never be the result of water or wind rearranging grains of sand. This absolute message/mind connection is at the very heart of the SETI program, the Search for Extra-Terrestrial Intelligence.

    What it’s hoped the radio telescopes utilised in this program will find are coded messages of some sort. If such were found the joy of the SETI crowd would be unbounded. Proof positive of alien intelligence would have been found. But these people have an enormous blind spot. Switch from radio telescopes to electron microscopes and redirect your gaze from the skies to the innermost recesses of any living cell, and what do you find? Messages, piled on top of messages, of the most astounding sort known. And not just an isolated one here or there, (though one would be enough) but messages by the trillions. Thus, proof positive is there for all the world to see, that biological life comes from an intelligent source. It did not spontaneously arise but is originally the product of thought, planning, and design.

    Everyone has heard of the chicken/egg conundrum; which came first? There are many chicken/egg relationships required for life to exist. Take ATP4 for example. ATP is the energy currency of life. Every biologic function is powered by ATP. Stop ATP production and you’re dead, instantly. That’s why cyanide is so lethal, it stops ATP production. ATP is produced by the molecular rotary motor ATP Synthase, which spins at around 7000 revs a minute with every turn spitting out three ATP molecules.5 Around 50kg of ATP is produced in our bodies daily by the over 10 quadrillion ATP Synthase rotary motors in our bodies converting ADP6 to ATP; less when resting, more when working hard.

    But … ATP Synthase is coded for on the DNA. So to get ATP Synthase you have to have the DNA coding for it. But to get the DNA code for ATP Synthase transcribed so as to get ATP Synthase, you need ATP to drive the transcription process. However, to get ATP to drive transcription, you need ATP Synthase to produce it. No ATP Synthase = no ATP = no transcription of DNA coding for ATP Synthase = no ATP Synthase = no ATP…

    To make the issue explicit: The whole interrelated, irreducibly complex DNA/ATP Synthase system has to be fully intact and functional for it to work. Without it life is not possible, thus it had to come into existence as a going concern from the very first moment of life’s existence.

    This information is nothing new, but it again highlights the absurd faith of the Materialist!

    Multiple codes, messages running in different directions with the information multi-layered on the genetic material, self-correction, vast storage mechanisms, postal systems to deliver the messages thither and yon …

    IMO, only a dedicated Materialist could look at the data and actually conclude that unintelligent random forces are a reasonable/rational explanation for Life.

    The more discoveries that are made, the more their faith needs to be ratcheted up! It is getting harder and harder to maintain one’s faith and to convince others that “No Intelligence is Necessary!”

    MY PREDICTION is that things will not get any easier for believers who are pushing the doctrine of abiogenesis, but rather that their task of evangelization for their cause will become more difficult as we learn more about the amazing wonders and design of life and the cell.

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