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Counting Dogs

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Recently, Mark Frank and I had a brief dialogue in the OP,“Didn’t everyone already know this about dogs?”
I’ve decided to clean it up a bit and re-post it because after my last question, I received no responses. At the outset, I would like to say that I place no blame about lack of responses on Mark Frank or anyone else in the last OP (as my post was rather quickly buried.)

Having said that, in this OP I would like somebody to address the question.

After one go around where I’d suggested that “success” should be counted as an increase in genetic information, Mark Frank corrected me, writing:

In biology success is breeding in the available environment. As a result there are about 400 million dogs in the world. There are about 200,000 wolves and they are extinct or endangered in many geographies. It is irrelevant how they would thrive without us. We are the dog’s environment and they have exploited that very effectively getting us to care for them by manipulating our parental instincts (and also providing some services).

and

I had in mind the biologist’s definition of the success of a species. This is purely and simply the species ability to reproduce in the world as it is . . . The genome is only relevant to the extent that it contributes to this. Any other definition of success leads to the odd result that a species could be highly “successful” but failing to survive.

In both cases, Mark Frank references “(I)n biology” and “the biologist’s” definition, so I will stipulate for the sake of this post that the convention in biology is that a species’ success is simply increase in number.

My response to Mark Frank:
According to your definition, evolutionary success has only to do with the genome (of the organism in question) so far as it informs the ability to reproduce “in the world as it is.” Is that about right?

In the case of domesticated dogs, I am informed that there is a loss of genetic information. And, you stated that dogs enjoy (numerical) success. Dogs, whether by breed or by number, are successful because of their responses to specific environmental nuances (e.g. we like dogs that chase sheep without eating them, so we feed them kibble and help them reproduce). This is easily measured by the increase in number of dogs (as compared to wolves, for example). One might even suggest that even if the narrative concerning sheep and kibble is just that, an unscientific narrative. Numbers don’t lie. Is that about right?

Onward:
Michael Behe in his controversial book, The Edge of Evolution, writes that such is generally the case for malaria-resistance — that the battle involves organisms “enjoying” loss of genomic info, to better get over on malaria so they can live to reproduce, (oh, and in turn, strains of plasmodium falciparum are doing likewise, sacrificing function, via loss of genetic information, to reproduce) –all of this only when necessary, or as Mark Frank suggested, “in the world as it is.”

Please, correct me if I am wrong, but don’t most (all?) scientists in the field agree with Behe’s assessment? That is, the “trench warfare” described by Behe is not actually that controversial, but an accepted finding.

It seems to me that an organism’s response to the environment (“in the world as it is”) involves dumping, if necessary, genomic information to succeed. Whether the selection is artificial or natural, the far, far, easier pathway for organisms is to lose genomic information. In fact, this is the dominant, almost universal, response according to scientific studies. . .

My question:

How could these more immediate pathways of losses of information possibly square with the evolutionary claim that natural selection (along with its numerical “success”) accounts for increased information in the genome, not only in a given organism, but for all organisms over the entire history of life on earth?

I thank you in advance for your considered responses.

Comments
'This ranks right up there with keith’s “one cannot be absolutely certain about anything” comment for sheer self-refuting absurdity.' But for me, it did, at least, have the merit of raising my spirits, by eliciting a response from you, WJM, highlighting the anomalously vapid character of such observations on what is, after all, quite an academic kind of board.Axel
November 3, 2014
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Tim- In an environment that is near equilibrium, where organisms have evolved to fill most of the available niches, there is no benefit to additional information. So most changes that increase fitness will reduce information. On the other hand, after a mass extinction event, when there are many open niches, additional information that becomes fixed in various populations of a particular species may help those populations fill different niches. In that case increases in information would be beneficial, and would be kept by natural selection.congregate
November 3, 2014
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I see "expected success" has a specific meaning in ecology that I was unaware of. I was meaning that when results do not confirm a hypothesis we discard it and our expectations.Alan Fox
November 3, 2014
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How do you differentiate between something surviving because of sheer dumb luck, and something surviving because it is more fit?
One way is by doing experiments - you take the phenotype into the lab and measure fitness and/or do selection experiments. Another way is to look at replicate populations: if an allele has been fixed in small populations but repeatedly declines in frequency in larger populations, then it is probably less fit. It may also clear that an allele that has survived is less fit because there is a detrimental effect on the individual, e.g. sickle cell anaemia. Of course, that example also demonstrates the problem with such a conclusion.Bob O'H
November 3, 2014
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There is nothing deep or mysterious about your basic question.
I should add that it has nothing to do with ID and is in no way controversial.jerry
November 3, 2014
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Tim, If you truly want to learn something, I suggest you start a new thread and limit the comments to your simple question. You are witnessing how comments descends into meaningless chaos as one person tries to tell the other person they do not know what they are saying on minutiae and often irrelevant. One person on the thread is Bob O'H who I believe is a geneticist and then there is Joe who has been commenting here for years. These two should be able to answer all your questions as one is pro ID and the other is not. There is nothing deep or mysterious about your basic question.jerry
November 3, 2014
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Bob O H, But therein lies the problem (besides that Alan Fox disagrees with you). How do you differentiate between something surviving because of sheer dumb luck, and something surviving because it is more fit? If luck wins more than greater fitness, does the characteristic that was luckier change into the characteristic that was fitter?phoodoo
November 3, 2014
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Alan Fox In dog breeding, the breeder is a major part of the niche. The distinction between artificial and natural selection is, well, artificial. Yes. The breeder in AS is part of the dogs' environment and produces a major part of the selection pressure on the small group being bred. The genes in the dogs don't know or care what is the source of the selection pressure, or if it's "natural" or "artificial". They are affected by it the same in either case.Enkidu
November 3, 2014
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KF claims dog breeding is "intelligent design". So that's how God created humans. He bred us like we bred dogs!Alan Fox
November 3, 2014
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Would WJM like to put flesh on the bones of his bare assertion? What is different between "natural" and "artificial" selection? Thought not. :)Alan Fox
November 3, 2014
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Tim Enkidu @10, Please stay on topic. I am not interested in biologists’ knowledge of the artificial nature of dog breeding, the lack of homogeneity across breeds, or that stable populations maintain stable pools. The information you cited on bottlenecks has nothing to do with the question. ???? My post at 10 was om topic. It addressed the claimed loss of information in dog breeds that you asked about. The amount of information in the dog species is spread across the entire gene pool. If through AS you create artificial bottlenecks you reduce the genetic diversity or total information in that breed but you don't reduce the diversity or information content of the entire gene pool. The whole argument from the DI is just a big red herring.Enkidu
November 3, 2014
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Alan Fox said:
In dog breeding, the breeder is a major part of the niche. The distinction between artificial and natural selection is, well, artificial.
This ranks right up there with keith's "one cannot be absolutely certain about anything" comment for sheer self-refuting absurdity.William J Murray
November 3, 2014
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So then if a trait that is not expected to survive better survives better, what do we call that?
Pure dumb luck. It can happen if either it is neutral, or slightly deleterious. The latter happens in small populations, where genetic drift dominates over selection, or when a deleterious trait is linked to an advantageous trait. Deleterious traits in dogs are a result of a bit of both: a breed is bred from a small number of ancestors, and there is strong selection for a limited number of traits.Bob O'H
November 3, 2014
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F/N: The breeder makes intelligently directed purposeful choices [a form of intelligent design as has been commonly noted but ignored as usual], the natural environment does not look ahead to long term goals. KFkairosfocus
November 3, 2014
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LoL! @ Alan Fox- Natural selection could never produce the different breeds of dogs. The difference between artificial and natural selection is obvious to an educated person.Joe
November 3, 2014
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Alan, How can you possibly be so thick? Did you not even read what Bob wrote? Here, read it slowly: "Fitness is (loosely) expected success". Do I care that you don't agree with his definition of fitness? Not at all! I am asking HIM to explain his definition. If you want to say Bob is wrong from the get go, fine, just say you think he is wrong!phoodoo
November 3, 2014
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me-think in regards to,,, "Whether the selection is artificial or natural, the far, far, easier pathway for organisms is to lose genomic information." ,,, you state,,, "Wrong.",,, ,,,But you provide no actual empirical evidence that it is wrong,, just a bunch of imaginary reasons why you think it is wrong.,,, I too can give a bunch of reasons why it is right, but, more importantly, I can references the empirical evidence to show I am right. “The First Rule of Adaptive Evolution”: Break or blunt any functional coded element whose loss would yield a net fitness gain - Michael Behe - December 2010 Excerpt: In its most recent issue The Quarterly Review of Biology has published a review by myself of laboratory evolution experiments of microbes going back four decades.,,, The gist of the paper is that so far the overwhelming number of adaptive (that is, helpful) mutations seen in laboratory evolution experiments are either loss or modification of function. Of course we had already known that the great majority of mutations that have a visible effect on an organism are deleterious. Now, surprisingly, it seems that even the great majority of helpful mutations degrade the genome to a greater or lesser extent.,,, I dub it “The First Rule of Adaptive Evolution”: Break or blunt any functional coded element whose loss would yield a net fitness gain. http://behe.uncommondescent.com/2010/12/the-first-rule-of-adaptive-evolution/ Michael Behe talks about the preceding paper on this podcast: Michael Behe: Challenging Darwin, One Peer-Reviewed Paper at a Time - December 2010 http://intelligentdesign.podomatic.com/player/web/2010-12-23T11_53_46-08_00 Thus, me think, though you may not like the evidence, as far a science is concerned you are wrong. Feynman puts your current situation, in regards to the empirical evidence at hand, like this: The Scientific Method - Richard Feynman - video Quote: 'If it disagrees with experiment, it’s wrong. In that simple statement is the key to science. It doesn’t make any difference how beautiful your guess is, it doesn’t matter how smart you are who made the guess, or what his name is… If it disagrees with experiment, it’s wrong. That’s all there is to it.” https://www.youtube.com/watch?v=OL6-x0modwYbornagain77
November 3, 2014
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In dog breeding, the breeder is a major part of the niche. The distinction between artificial and natural selection is, well, artificial.Alan Fox
November 3, 2014
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Tim, This is getting out of hand with irrelevant comments. I suggest you get a basic book in genetics. Genetics for Dummies is very good and will probably answer all your questions. It is one of three or four sources I have used to find quick answers to questions like yours.jerry
November 3, 2014
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Remember the niche, phoodoo. Remember the niche!Alan Fox
November 3, 2014
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Expectations aren't the issue. Results are. Results of observation and experiment. Like dog breeding has been a long - running experiment in the power and limits of selection.Alan Fox
November 3, 2014
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Bob, So then if a trait that is not expected to survive better survives better, what do we call that?phoodoo
November 3, 2014
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Biological fitness only pertains to natural selection. It does not pertain to artificial selection.Joe
November 3, 2014
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So does success equal to fitness, or are they two completely different concepts, and if so, what is the definition of fitness?
Fitness is (loosely) expected success, where 'expected' is used in a probabilistic sense. One way of thinking about it is that from a starting point, you run the tape of life for a generation a lot of times, and the fitness of an allele is the average in the change in its frequency. (I'm simplifying quite a bit, but I only want to make the distinction between observed success and fitness clear)Bob O'H
November 3, 2014
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Whether the selection is artificial or natural, the far, far, easier pathway for organisms is to lose genomic information.
Wrong. Losing genomic information is going to reduce the size of the genotype network. A reduction in size will decrease the chance of finding a new phenotype within the network. Gene mutation ,whether neutral or beneficial helps in increasing the network size. When the network is large, in 1 dimension a new phenotype can found within 15 steps, as dimensions increases, the search space for new phenotype reduces drastically. You can calculate the search sphere volume for any dimension using the formula Pi^(d/2)/r(d/2+1) d = dimension, r=radius of search sphereMe_Think
November 3, 2014
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Emkidu:
Macroevolution is defined as evolution at or above species level.
That is the meaningless definition. Try the following:
“MACROEVOLUTION: ‘Major’ evolutionary change, usually thought of as large changes in body form or the evolution of one type of plant or animal from another type. The change from our primate ancestor to modern humans, or from early reptiles to birds, would be considered macroevolution. “MICROEVOLUTION: ‘Minor’ evolutionary change, such as the change in size or color of a species. One example is the evolution of different skin colors or hair types among human populations; another is the evolution of antibiotic resistance in bacteria.” - Coyne, Jerry A. Why Evolution Is True. 2009. Oxford University Press, Glossary, pp. 268-269.
Joe
November 3, 2014
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ID uses Crick's definition of biological information. Natural selection has proven to be impotent.Not only that there isn't any methodology that demonstrates all genetic changes are accidents, errors and/ or mistakes. And yes sickle-cell anemia is a definite loss of function which means it is a loss of specification and a loss of information. And that is important because macroevolution requires an increase in biological information. And that has never been observed to happen with differing accumulations genetic accidents, errors and/ or mistakes. No one can model such a thing.Joe
November 3, 2014
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Tim, Well I think one aspect of this discussion that is highly relevant, is that while perhaps Mark Frank accepts the definition that any genome that survives and prospers is by definition successful (can we substitute the word fit?), that seems to be a huge point of contention with many of the evolutionists posters here, and likewise at TSZ. There are some that argue that sometimes the less fit, or less well adapted, survive despite their lack of being well adapted. So are we using a definition that says being well adapted means one survives, or are we using a different definition of being well adapted (or more fit, or more successful, or whatever term we want to use)? So does success equal to fitness, or are they two completely different concepts, and if so, what is the definition of fitness?phoodoo
November 3, 2014
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Tim
How could these more immediate pathways of losses of information possibly square with the evolutionary claim that natural selection (along with its numerical “success”) accounts for increased information in the genome, not only in a given organism, but for all organisms over the entire history of life on earth?
This looks like a simple question but the answer is complicated as it makes a number of assumptions which I dispute. 1) information is a word with many meanings. If you take the kind of formal definition that ID proponents like to use then it is something like –log2(the probability of a given outcome assuming a uniform probability distribution over all outcomes). It is not clear how you apply that to canine genomes – what outcomes? what probability distribution? 2) I don’t think that evolutionary scientists do claim that “natural selection … accounts for increased information in the genome”. They don’t typically think in terms of increase or decrease of information. 3) It is more likely that evolutionary scientists would talk in terms of function.  It may just be that the main differences between a wolf and a dog involve less genes functioning. But this is a very hard call.  A gene can be functional in one environment and non-functional or detrimental in another. I know nothing about canine genetics but take the famous example of human genetics.  Do the haemoglobin mutations which confers resistance to malaria if there is one copy but sickle cell disease if there are two count as loss of function? Mark Frank
November 3, 2014
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Certainly evolution can happen by loss of function, and I guess when evolution is quick (as in host-parasite/pathogen interactions) it can be a quicker way to evolve resistance (although loss of function can also cause a loss of fitness in the absence of the pathogen). But there are also gains of function, e.g. through duplication of a resistance gene, followed by its mutation. With reference to dogs, I haven't read Lönnig's book, so can you summarise his arguments for why loss of information is important in dog evolution?Bob O'H
November 3, 2014
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