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Large-scale study: Every tissue has its own pattern of active alleles

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From ScienceDaily:

Every gene in (almost) every cell of the body is present in two variants — so called alleles: one is deriving from the mother, the other one from the father. In most cases both alleles are active and transcribed by the cells into an RNA message. However, for a few genes, only one allele is expressed, while the other one is silenced. The decision whether the maternal or the paternal version is shut down occurs early in embryonic development — one reason, why for long it was thought that the pattern of active alleles is nearly homogeneous in the various tissues of the organism.

The new study (DOI:10.7554/eLife.25125), where CeMM PhD Student Daniel Andergassen is first author (now a PostDoc at Harvard University), uncovers a different picture. By performing the first comprehensive analysis of all active alleles in 23 different tissues and developmental stages of mice, the team of scientists revealed that each tissue showed a specific distribution of active alleles. Paper. (public access) – Daniel Andergassen, Christoph P Dotter, Daniel Wenzel, Verena Sigl, Philipp C Bammer, Markus Muckenhuber, Daniela Mayer, Tomasz M Kulinski, Hans-Christian Theussl, Josef M Penninger, Christoph Bock, Denise P Barlow, Florian M Pauler, Quanah J Hudson. Mapping the mouse Allelome reveals tissue-specific regulation of allelic expression. eLife, 2017; 6 DOI: 10.7554/eLife.25125 More.

It happens differently in different tissues of the body but it all somehow works. Hmmm.

See also: Did algae trigger complex cells before 650 million years ago?

Comments
Allelome? "Genomic imprinting is an epigenetic process through which genes are expressed in a parent-of-origin-specific manner." "widespread and complex mechanism"? https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5539102/pdf/41598_2017_Article_7514.pdf" Dionisio
"...cluster size varies dynamically during development and can be substantially larger than previously thought, with the Igf2r cluster extending over 10 Mb in placenta." "...tissue-specific silencing seen for XCI and imprinted silencing may be explained by actions on tissue-specific enhancers. " "...the size of an imprinted cluster in a particular tissue correlated with size of the region showing parental-allele specific H3K27ac enrichment." "...all types of allele-specific expression that we observed may be mediated by allele-specific actions on enhancers." Daniel Andergassen, Christoph P Dotter, Daniel Wenzel, Verena Sigl, Philipp C Bammer, Markus Muckenhuber, Daniela Mayer, Tomasz M Kulinski, Hans-Christian Theussl, Josef M Penninger, Christoph Bock, Denise P Barlow, Florian M Pauler, Quanah J Hudson. Mapping the mouse Allelome reveals tissue-specific regulation of allelic expression. eLife, 2017; 6 DOI: 10.7554/eLife.25125" Complex functionally specified informational complexity Dionisio
"Gene variant activity is surprisingly variable between tissues" Did somebody say "surprisingly"? There they go again. When are they going to stop getting so easily surprised? :) Dionisio

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