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Are machine-information metaphors bad for science?

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According to Massimo Pigliucci and Maarten Boudry, the widespread use of machine-information metaphors is unfortunate and misleading. They complain about textbooks that develop metaphors to a considerable level of detail. As an example, they cite Alberts, who is often quoted for his analogy between a cell and a “miniature factory, complete with assembly lines, messengers, transport vehicles, etc.” Another machine metaphor they dislike is that of the genome as a “blueprint”, notably in the hype surrounding the Human Genome Project. Whilst these analogies are widely held within the scientific community and by educators, the main target of Pigliucci and Boudry’s paper appears to be intelligent design:

“The analogy between living organisms and man-made machines has proven a persuasive rhetorical tool of the ID movement. In fact, for all the technical lingo and mathematical ‘demonstrations’, in much of their public presentations it is clear that ID theorists actually expect the analogies to do the argumentative work for them. In Darwin’s Black Box, Behe takes Alberts’ machine analogy to its extreme, describing the living cell as a complicated factory containing cargo-delivery systems, scanner machines, transportation systems and a library full of blueprints.”

Pigliucci and Boudry rightly trace the emergence of machine metaphors back to, at least, the Middle Ages, and a rise to prominence with the rise of science in the 17th Century. The well-known analogy made by William Harvey is mentioned: the human heart is a pump. The authors also rightly point out that the scientists of the time gave these metaphors some additional substance, because they considered human designs to be imaging designs of the Creator.

“For Newton and many of his contemporaries, the importance of the mechanical conception of nature was greater than the mere term ‘metaphor’ would suggest, as the development of mechanistic philosophy was itself largely inspired by religious motivations. As Shanks wrote in his account of the history of the design argument, “the very employment of machine metaphors invited theological speculation”.”

The authors turn to David Hume to find arguments foreshadowing the demise of design inferences made by the science community. Hume’s (1779) Dialogues concerning natural religion is said to expose “several problems with the central analogy”. The key thought is that our experience of design is limited to human artifacts, and it is presumptuous to extrapolate from this and make statements about design in general and God’s design in particular.

“Hume realized that, at least in some cases, appearances of intelligent design can be deceptive. [. . .] Although Hume does not deny that we can discern similarities between nature and human artifacts, he warns us that the analogy is also defective in several respects. And if the effects are not sufficiently similar, conclusions about similar causes are premature. [. . .] Aware of the fallibility and imperfections of human reasoning, Hume remains highly skeptical about the design inference and the machine analogy, even though he was not able to provide a satisfactory explanation for the appearance of design in nature.”

It hs always surprised me that David Hume’s arguments are considered weighty. The preceding generations of scholars did have a rationale for thinking that there is a relationship between the Creator’s design and human design. This was based on the concept of image-bearing, drawn from the Judeo-Christian worldview of the time. If man is made in the image of God, they reasoned, then we design because God designs, and analogies can be drawn between human design and design in nature. Science became, for Johannes Kepler as for them all, “thinking God’s thoughts after him”.

For more, go here.

Comments
Neil Rickert: I have read with interest the post on your blog. I have a few comments: 1) Pigliucci and Boudry are particularly concerned with the use of metaphors in biology, such as the idea of DNA as a blueprint for the organism and the idea of the cell as a factory. I am not too sure that the "metaphor" angle is the right one here. For instance, I would never say that "DNA is the blueprint for the organism", but I would definitely say that it contains specific information which the organism certainly needs. That rules away the "metaphor", and describes DNA for what it really is: a mass memory. In the same way, I would never say that the "cell" is a "factory". The cell is certainly much more than that. But it certainly contains, and uses, specific biochemical "machines". This is not a metaphor, but a realistic description. IOWs, I agree that we need not "metaphors" in biology. We must describe things for what they are. 2) My own experience in the world tells me that we humans are not machines. I absolutely agree. But that does not mean that in us there are not parts which are machines. 3) Indeed, I see biological creatures as very different from designed things. Again, if you mean that living things are more than designed objects, I absolutely agree. But if you mean that, in living beings, there are not parts which are obviously designed and which work as designed machines, then I have to disagree. 4) Perhaps the worst of the machine metaphors is the one that sees the brain as a computer. That has always seemed doubtful to me, so I find it no surprise that AI (artificial intelligence) has made so little progress in the 60 years since Turing’s famous paper. Again, the problem is not with metaphors here. AI believes that consciousness arises from the physical structure of the brain. That is a silly belief, and completely false. That's why AI has made so little progress, and will go on making no further progress at all. Well, the brain "is" in part a computer. It certainly has great computing power. But it is more than that. And consciousness is much more than the brain. The brain is an interface for consciousness. But again, there is no doubt that part of it works as a computer (probably better). That part is obviously designed. 5) In Linguistics, the mechanistic thinking from Chomsky has dominated the field for some time. Yet it is surely mistaken. The Wittgenstein view of language as a form of life seems to present a rather more realistic view of natural language. In philosophy we see what seems to be an excessive reliance of logic with its mechanistic rules of inference. Typically, within epistemology, knowledge is defined as justified true belief (or something similar), and that seems rather too mechanistic. And then the all too frequent arguments that deny free will are based on an overly mechanistic view of the world. Again I agree. I think we in ID have no desire to "reduce" conscious processes to mechanistic procedures. But we must recognize that mechanistic procedures are "used" by conscious processes. That is not reductionism, but simple realism. 6) It should be obvious that the world is not the product of design. The only thing which is obvious is that the world is much more than a simple "product of design", but that many aspects of it are certainly designed. 7) For sure, I can look at Kepler’s laws of planetary motion, and see intelligent design in those laws. But the intelligent designer was none other than Johannes Kepler himself. If Kepler’s laws were part of the design of a mechanistic world, we would expect them to be followed exactly. Yet they are only an approximation. It took great skill and knowledge for Kepler to come up with a mathematically simple approximation that worked so well. But it is not evidence of an intelligently designed world. Here I don't understand well your point. Let's see. Mathematical laws and models certainly help us understand the world, and make us interact very efficiently with it. But mathemathical laws are njot "created" by us. They are rather "innate" in human mind (I am definitely a neoplatonist about mathemathics). The fact remains that they work for the outer world. OK, they are approximate, all of them, but that's probably because our understanding is not complete, or because of objective computational difficulties. or because of objective measurement difficulties. It is interesting, however, that the most counter intuitive of physical "mathematical models", QM, is also the most precise. The correspondence between outer world and inner mathematical laws is certainly a cognitive problem, which cannot be easily dismissed. It has nothing to do with metaphors. It is just an unexpected fact, the basis for true science and good philosophy. 8) So, yes, I do see the overuse of such metaphors as bad for science, bad for philosophy, bad for theology. OK, so let's get rid of them, and stick to facts: a) Living beings, while remaining an unfathomable reality for many aspects, certainly do contain, and use, biochemical machines. And enzyme is a machine. DNA is a mass memory. Ribosomes are machines. That is not a metaphor. It's just what it is. b) But what is a machine? It's simple. A machine is an object which has been structured by a conscious intelligent designer to perform a function, to achieve a purpose. Now, we must be very precise. The function, the purpose, are not in the machine. They are in the conscious representations of the designer. Or in the conscious representations of an observer. Only consciousness knows purposes. Nor, in any sense, is the machine, either biological or mechanical, a "metaphor" of that purpose. It is just an "instrument" of that purpose. It isn't the same thing. DNA is a machine. Enzymes are machines. Ribosomes are machines. They serve purposes, well defined purposes. And they are designed. But in no sense they are "metaphors" of anything.gpuccio
October 27, 2010
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Life is either intelligently organized or it is the result of an infinite series of serindipious accidents, that are somehow organized (no one has explained exactly how premature death manages to do such a thing) into a purposefully interacting system. Whether a deity participates in that organizing intelligence, or whether it is an organizing intelligence inate to nature will probably never be determined. Only those who are truly paranoid about religion find themselves stuck with the random mutation and natural selection explanation. A Few Impertinent Questions about Autism, Freudianism and Materialism http://30145.myauthorsite.com/Bertvan
October 27, 2010
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Perhaps they also need to write a paper reminding molecular biologists not to be 'surprised' at what they are finding in the efficient operation of the molecular machines: Cells Know Their Physics - October 2010 Excerpt: the Complex I macromolecular complex. This machine employs a railroad-like piston and coupling-rod mechanism to create the proton gradient that drives ATP synthesis.“ It is remarkable that the most fundamental energy-generating machinery in cells is based on the wave properties of electrons, which allow for an efficient transport of energy-carrying particles along the chain of redox cofactors toward molecular oxygen via quantum tunneling as demonstrated by this study.” http://www.creationsafaris.com/crev201010.htm#20101027abornagain77
October 27, 2010
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Neil Rickert: The absence of any evidence of design is obvious to me. Others see it as obvious that there is design. There is no evidence that could settle the disagreement between the two sides. Ummm Neil, if it is demonstrated that blind, undirected processes can produce CSI or IC then ID falls. IOW there is evidence that could settle the disagreement. And it is worth noting that such evidence has yet be found. I would also go as far to say that the only "evidence"for design people lie you would accept is a meeting with the deigner(s), including watching the designer(s) in action.Joseph
October 27, 2010
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Neil, I'm trying to say this in as polite a way as I can. This IS an ID site, and this issue IS related to ID in a significant way in that it is an example of materialism pretending to be science. I suggest you go through KF's recent thread regarding methodological naturalism and Lewontin's famous line about not allowing a divine foot in the door. The only reason one would avoid using design metaphors in science is due to an a priori materialistic metaphysic, which as Kairosfocus pointed out in no uncertain terms, begs the question.CannuckianYankee
October 26, 2010
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Really Neil, is that the best you can do? A guilt trip? I do hope you stick around.Upright BiPed
October 26, 2010
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Upright BiPed, in comment #34 wrote: "insisting that Kepler himself was the responsible party for the physical regularities he elucidated". That was a misrepresentation of my point. Upright BiPed, in comment #37 wrote: "Your assertion that no amount of evidence can settle the issue ..." That's another misrepresentation of what I wrote. I seem to recall a principle about "do not bear false witness."Neil Rickert
October 26, 2010
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Neil, Your assertion that no amount of evidence can settle the issue is unacceptible to the design hypothesis. Yours is an unscientific position. Enjoy your stay.Upright BiPed
October 26, 2010
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To Neil, you claim the absence of any evidence for design is obvious to you? Is not it also obvious to you that a single grain of sand does not care for you? Since it is obvious that a single grain of sand cannot care for you why is the following finely parameter as it is?,, Evidence for Belief in God - Rich Deem Excerpt: Isn't the immense size of the universe evidence that humans are really insignificant, contradicting the idea that a God concerned with humanity created the universe? It turns out that the universe could not have been much smaller than it is in order for nuclear fusion to have occurred during the first 3 minutes after the Big Bang. Without this brief period of nucleosynthesis, the early universe would have consisted entirely of hydrogen. Likewise, the universe could not have been much larger than it is, or life would not have been possible. If the universe were just one part in 10^59 larger, the universe would have collapsed before life was possible. Since there are only 10^80 baryons in the universe, this means that an addition of just 10^21 baryons (about the mass of a grain of sand) would have made life impossible. The universe is exactly the size it must be for life to exist at all. http://www.godandscience.org/apologetics/atheismintro2.html ,,, who put care into that single grain of sand Neil? My Beloved One - Inspirational Christian Song - video http://www.metacafe.com/watch/4200171bornagain77
October 26, 2010
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To Upright BiPed: I credit Kepler only for his stated laws. I do no say he is responsible for the way that the solar system actually behaves. The absence of any evidence of design is obvious to me. Others see it as obvious that there is design. There is no evidence that could settle the disagreement between the two sides. This is the comment thread to a blog post, and not an ID forum. Moreover, the particular thread is only peripherally related to ID. I am trying to be respectful of this site's primary emphasis on ID by not becoming entangled in pointless arguments on inappropriate threads.Neil Rickert
October 26, 2010
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Neil, Your contribution here would have been much more interesting if you had actually engaged the issue. Twice in your personal blog you simply make the bald assertion that things are not designed, e.g. "It should be obvious that the world is not the product of design." You preceded that comment with a throwaway statement about Hume, and followed it by completely removing any distinction between what is real and what men say about it (insisting that Kepler himself was the responsible party for the physical regularities he elucidated). I can see why you would wish to avoid engaging ID arguments on an ID forum; a more serious discussion might ensue.Upright BiPed
October 26, 2010
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Here a shortened video of Scott Minnich describing the parts of the flagellum 'machine' that I just loaded: Bacterial Flagellum - Molecular Machine - Scott Minnich http://www.metacafe.com/watch/5400167/ note: references are in description of video.bornagain77
October 26, 2010
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mataphor? LoL metaphors- they ain't metaphors...Joseph
October 26, 2010
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1- They ain't mataphors 2- The only people who have an issue with analogies are the people who don't have any to draw upon- think about it what analogy can they use?- "Oh look at what that tornado did! That is evidence of what blind, undirected proceses can do!"Joseph
October 26, 2010
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Sorry folk. I had thought that I was making an honest comment on the question of whether the use of the machine metaphor posed a problem. And I thought I was agreeing that it was a problem. Apparently, many responders thought that I was attacking ID. But that was not my point at all. I see the problem both among ID proponents and among evolution proponents. I really don't want to get into the morass of arguments on ID vs. evolution. I see that as a different topic, and I usually avoid commenting on posts that are more directly on that topic.Neil Rickert
October 26, 2010
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Neil, Speaking of jumping to conclusions... We do know that DNA is highly specified information. During observation, the only source we have ever seen of highly specified information is an intelligent one. Is it jumping to conclusions do assume that materialistic processes can create DNA?ellijacket
October 26, 2010
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The heart is a pressure-increaser, not a pump. DNA is "evolved" to the proteins. Proteins naturally select the correct shape, randomly.Collin
October 26, 2010
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The problem for Pigliucci, let's assume we drop the machine metaphor, how will you described mechanisms that: 1. pump 2. translate 3. code 4. decode 5. signal 6. control 7. error correct 8. detect 9. sense These are machine metaphors!!!!! Good luck trying to replace these very accurate description with politcially correct double speak!scordova
October 26, 2010
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Neil Rickert, I noticed in your blog, in criticism to metaphor use, that you stated that mathematics is only an 'approximation' of reality. While that sentiment may be true in a overall sense, what is found when we dig to the deepest levels is that 'transcendent' math actually dictates how reality will operate: notes: Finely Tuned Big Bang, Elvis In The Multiverse, and the Schroedinger Equation - Granville Sewell - video http://www.metacafe.com/watch/4233012 To solidify Dr. Sewell's observation that transcendent 'math' is found to be foundational to reality, I note just one little equation: 0 = 1 + e ^(i*pi) — Euler Believe it or not, the five most important numbers in mathematics are tied together, through the complex domain in Euler's number, And that points, ever so subtly but strongly, to a world of reality beyond the immediately physical. Many people resist the implications, but there the compass needle points to a transcendent reality that governs our 3D 'physical' reality. God by the Numbers - Connecting the constants Excerpt: The final number comes from theoretical mathematics. It is Euler's (pronounced "Oiler's") number: e*pi*i. This number is equal to -1, so when the formula is written e*pi*i+1 = 0, it connects the five most important constants in mathematics (e, pi, i, 0, and 1) along with three of the most important mathematical operations (addition, multiplication, and exponentiation). These five constants symbolize the four major branches of classical mathematics: arithmetic, represented by 1 and 0; algebra, by i; geometry, by pi; and analysis, by e, the base of the natural log. e*pi*i+1 = 0 has been called "the most famous of all formulas," because, as one textbook says, "It appeals equally to the mystic, the scientist, the philosopher, and the mathematician." http://www.christianitytoday.com/ct/2006/march/26.44.html?start=3 (of note; Euler's Number (equation) is more properly called Euler's Identity in math circles.) Moreover Euler’s Identity, rather than just being the most enigmatic equation in math, finds striking correlation to how our 3D reality is actually structured,,, The following picture, Bible verse, and video are very interesting since, with the discovery of the Cosmic Microwave Background Radiation (CMBR), the universe is found to actually be a circular sphere which 'coincidentally' corresponds to the circle of pi within Euler's identity: Picture of CMBR 3D picture of Cosmic Microwave Background Radiation Proverbs 8:26-27 While as yet He had not made the earth or the fields, or the primeval dust of the world. When He prepared the heavens, I was there, when He drew a circle on the face of the deep, The Known Universe by AMNH – video - (please note the 'centrality' of the Earth in the universe in the video) http://www.youtube.com/watch?v=17jymDn0W6U The flatness of the ‘entire’ universe, which 'coincidentally' corresponds to the diameter of pi in Euler’s identity, is found on this following site; (of note this flatness of the universe is an extremely finely tuned condition for the universe that could have, in reality, been a multitude of different values than 'flat'): Did the Universe Hyperinflate? – Hugh Ross – April 2010 Excerpt: Perfect geometric flatness is where the space-time surface of the universe exhibits zero curvature (see figure 3). Two meaningful measurements of the universe’s curvature parameter, ½k, exist. Analysis of the 5-year database from WMAP establishes that -0.0170 < ½k < 0.0068.4 Weak gravitational lensing of distant quasars by intervening galaxies places -0.031 < ½k < 0.009.5 Both measurements confirm the universe indeed manifests zero or very close to zero geometric curvature,,, This following video shows that the universe also has a primary characteristic of expanding/growing equally in all places,, which 'coincidentally' strongly corresponds to e in Euler's identity. e is the constant used in all sorts of equations of math for finding what the true rates of growth and decay are for any given problem trying to find as such: Every 3D Place Is Center In This Universe – 4D space/time – video http://www.metacafe.com/watch/3991873/ Towards the end of the following video, Michael Denton speaks of the square root of negative 1 being necessary to understand the foundational quantum behavior of this universe. The square root of -1 is 'coincidentally' found in Euler's identity: Michael Denton – Mathematical Truths Are Transcendent And Beautiful – Square root of -1 is built into the fabric of reality – video http://www.metacafe.com/watch/4003918" I find it extremely strange that the enigmatic Euler's identity would find such striking correlation to reality. In pi we have correlation to the 'sphere of the universe' as revealed by the Cosmic Background radiation, as well pi correlates to the finely-tuned 'geometric flatness' within the 'sphere of the universe' that has now been found. In e we have the fundamental constant that is used for ascertaining exponential growth in math that strongly correlates to the fact that space-time is 'expanding/growing equally' in all places of the universe. In the square root of -1 we have what is termed a 'imaginary number', which was first proposed to help solve equations like x2+ 1 = 0 back in the 17th century, yet now, as Michael Denton pointed out in the preceding video, it is found that the square root of -1 is required to explain the behavior of quantum mechanics in this universe. The correlation of Euler's identity, to the foundational characteristics of how this universe is constructed and operates, points overwhelmingly to a transcendent Intelligence, with a capital I, which created this universe! It should also be noted that these universal constants, pi,e, and square root -1, were at first thought by many to be completely transcendent of any material basis, to find that these transcendent constants of Euler's identity in fact 'govern' material reality, in such a foundational way, should be enough to send shivers down any mathematicians spine. Further discussion can be found here relating Euler's identity to General Relativity and Quantum Mechanics: https://uncommondescent.com/intelligent-design/fibonacci-life/#comment-364379 Here is a very well done video, showing the stringent 'mathematical proofs' of Euler's Identity: Euler's identity - video http://www.youtube.com/watch?v=zApx1UlkpNs The mystery doesn't stop there, this following video shows how pi and e are found in Genesis 1:1 and John 1:1 Euler's Identity - God Created Mathematics - video http://www.metacafe.com/watch/4003905 This following website has the complete working out of the math of Pi and e in the Bible, in the Hebrew and Greek languages respectively, for Genesis 1:1 and John 1:1: http://www.biblemaths.com/pag03_pie/ etc.. etc.. etc..bornagain77
October 26, 2010
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M. Holcumbrink wrote "If the insect’s brain is not a computer, I’ll be a monkey’s uncle." That's a good example of the problem. You are making a very strong assertion which appears to be based on the methodology known as "jumping to conclusions." Personally, I have no difficulty admitting that we are far short of understand the insect brain.Neil Rickert
October 26, 2010
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M. Holcumbrink, thanks for the links to the robot dogs. Made my morning,,, :) https://uncommondescent.com/intelligent-design/are-machine-information-metaphors-bad-for-science/#comment-366544bornagain77
October 26, 2010
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Quite simply, those who automatically rule out design in nature are repelled by concepts, or even descriptions, that invoke design. This is an emotional response, generated directly by the atheistic worldview. The fact that it is impossible to avoid "machine-information metaphors" in nature makes such a response even more absurd.Chris Doyle
October 26, 2010
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from dictionary.com machine: an apparatus consisting of interrelated parts with separate functions, used in the performance of some kind of work...Collin
October 26, 2010
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Is calling a heart a pump a metaphore? Or is it merely accurate? I mean, what is a machine? I think that the definition of a machine fits well with many cell features. What else do we call them? Molecular goings-on?Collin
October 26, 2010
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The overuse of such metaphors is bad, because they misdescribe the way the world is. I have posted a more detailed response on my blog.
One misuse of a machine metaphor is Junk DNA (as in machines or mistakes of of badly designed machines). Oddly, that metaphor was promoted by Darwinists, not ID proponents. 1/3 of the Engineers at MIT are devoted to studying biological phenomenon. Pleas for suppressing truth in the name of Darwinism will go unheeded because science marches on and biology is best understood under the paradigm of engineering, not natural selection. Darwin Dissed by Doctors, Design Revolution Continues at MIT As a respected biologist said:
However, fitness is hard to define rigorously and even more difficult to measure….An examination of fitness and its robustness alone would thus not yield much insight into the opening questions. Instead, it is necessary to analyze, on all levels of organization, the systems that constitute an organism, and that sustain its life. I define such systems loosely as assemblies of parts that carry out well-defined biological functions. Andreas Wagner
which sounds like someone we know:
A single system composed of several well-matched, interacting parts that contribute to the basic function of the system Michael Behe
And such systems are best labeled "machines", not selectively advantaged features. In fact, there are specific machines in biology that have analogs in the engineering world. Mike Gene lists them in his book, Design Matrix.scordova
October 26, 2010
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BA77, I very much appreciate the links you post on this site. They are very beneficial to me.M. Holcumbrink
October 26, 2010
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Neil, I recently posted this elsewhere: "The amount of [intelligent] reconfigurations of matter & energy (machines, software, computing, automatic controls, all via human intelligence) involved in getting anywhere near what biological life can do is staggering. Teams of human engineers are required to produce these lousy, cheap imitations of what biological life can do: http://www.youtube.com/watch?v=cHJJQ0zNNOM http://www.youtube.com/watch?v=nUQsRPJ1dYw http://www.youtube.com/watch?v=67CUudkjEG4 http://www.youtube.com/watch?v=wIuRVr8z_WE http://www.youtube.com/watch?v=JzfP0Ig7eVQ This is reverse engineering writ large."M. Holcumbrink
October 26, 2010
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Neil Rickert, regarding #7 One way guided missiles are directed to their targets is by thermal imaging. Satellites guide the missile to a point, then a thermal camera takes over, which receives a picture of the target. The picture is analyzed by software and compared to a pre-defined image. The software constantly analyzes the images received from the camera, fitting them to the predefined image, and at the same time generating in real time mechanical movement of the control surfaces to guide the missile to the target. A computer is needed to do this. But insects do this, too. They receive an image, either in terms of sight or smell, and their little compact brains somehow guide the insect to whatever it is trying to get to. Now, whatever is happening in the brain of that insect is doing the exact same thing that the guided missile is doing. It is analyzing sensory inputs and generating mechanical responses to guide the insect’s body to the target. It should also be noted that it utilizes touch, sight, and smell to move across terrain. If the insect’s brain is not a computer, I’ll be a monkey’s uncle.M. Holcumbrink
October 26, 2010
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I think us ID fellers should issue the following challenge: If the machine-software analogy is just that, an analogy, then in what way do mechanisms within the cell (shoot, I just did it)... in what way do the globs of molecules in cells differ from machines?M. Holcumbrink
October 26, 2010
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"As Shanks wrote in his account of the history of the design argument, 'the very employment of machine metaphors invited theological speculation'.” Man, these guys are geniuses.allanius
October 26, 2010
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