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At Evolution News: Gene Sharing Is More Widespread than Thought, with Implications for Darwinism

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David Coppedge writes:

Evidence is growing that organisms share existing genetic information horizontally, not just vertically. This has immense implications for neo-Darwinian theory that are not yet fully recognized. If traits can be shared across species, genera and even phyla, they are not being inherited from common ancestors. The findings might also cast stories about convergence and co-evolution in a completely different light. Let’s look at some of the news on this front.

Introgression

Last month, Current Biology posted a Primer on Introgression by four authors. Introgression refers to “lasting transfer of DNA from one of the species into the genome of the other” by means of hybridization and backcrossing. Basically, it describes “the incorporation of the DNA from one species into another.”

Kleptomania

In news from the Florida Museum of Natural History, biologists discussed how a new genome for ferns reveals “a history of DNA hoarding and kleptomania.” The article is classified under “Evolution” but what is Darwinian about it? 

Photo credit: Clyde Gravenberch via Unsplash.

The article references a 2014 study that showed another instance of kleptomania. Ferns seem to have inherited genes for thriving in shade from distantly related plants, but “exactly how organisms separated by millions of years of evolution are able to swap fully functional genes remains unclear.” 

“The mechanisms behind horizontal gene transfer remain one of the least investigated areas of land plant evolution,” Doug Soltis explained. “Over evolutionary timescales, it’s a bit like winning the lottery. Any time a plant is wounded, its interior is susceptible to invasion from microbes, but for their DNA to be incorporated into the genome seems amazing.

These examples illustrate a sea change in thinking about horizontal gene transfer (HGT), which was formerly thought to be restricted to microbes. 

Library Books

A related preprint by Haimlich et al. on bioRxiv investigated “Widespread horizontal gene transfer between plants and their microbiota.” Finding 180 genes that indicated “prevalent horizontal gene transfer,” they concluded,

Our results suggest that horizontal gene transfer between hosts and their microbiota is a significant and active evolutionary mechanism that contributed new traits to plants and their commensal microbiota.

Crediting evolution seems stretched, though. Information shared is not the same as information innovated, nor is borrowing a book as difficult as writing one.

From Division of Labor to Expertise Sharing

Speaking of bacteria, Duke University proclaims that “Microbial Communities Stay Healthy by Swapping Knowledge.” How and why microbes do this prompted a metaphor that portrays intelligent action:

Put another way, a construction crew could be extremely resilient to electricians quitting if the plumbers on site also knew how to wire a building. But the same crew would be even more resilient if the remaining electricians could simply transfer their expertise to anyone on the job when needed, no matter their profession.

Dr. Lingchong You at Duke considers HGT a “dynamic division of labor” by which bacteria maintain their health in nature.

Human Sharing

With these reassessments of heredity in mind, how much of assumed “human evolution” could be explained by gene sharing instead of by the neo-Darwinian mutation-selection model? Have human beings been sharing library books or downloading each other’s software apps instead of writing them from scratch?

News from the University of Tübingen says that paleoanthropologists are considering the degree to which genetic hybridization affected the human skeleton and skull shape.

Many people living today have a small component of Neanderthal DNA in their genes, suggesting an important role for admixture with archaic human lineages in the evolution of our species. Paleogenetic evidence indicates that hybridization with Neanderthals and other ancient groups occurred multiple times, with our species‘ history resembling more a network or braided stream than a tree. Clearly the origin of humankind was more complex than previously thought.

Similar conclusions are being reached at North Carolina State University where a news item says that “Ancient DNA caused a revolution in how we think about human evolution.” Out is the old single-file march of progress from ape to man. In is the “a series of streams that converge and diverge at multiple points.” The “exploratory study” going on at NC State is changing the view that evolution is driven by external environmental factors, such as climate, and toward the view that internal gene flow causes the variations in human anatomy.

A question arises whether these variations and combinations of variations are random when introduced by gene flow instead of mutation. If the latter, then old-school Darwinians might argue that they are merely additional manifestations of neo-Darwinism’s unguided process of random variation and selection. 

But if these shared genes are instead modular pieces of functional information that are pre-adapted to join up in certain ways, then biologists will need to consider whether the source of that information requires an intelligent cause. The case for intelligent design in instances of gene flow can be further strengthened by observing whether newly incorporated genes are epigenetically regulated, targeted to functional loci, and responsive to signals from the environment. If so, organisms have been equipped with mechanisms to ensure robustness to changing conditions. That implies Foresight.

Full article available at Evolution News.

The analogy of gene sharing with taking a book from a library implies not only that the borrowed book was already written, but that the borrower knows how to read it and to apply the information in a beneficial way. Such abilities are consistent with pre-existing intelligence (a divine Creator) actively coordinating the design of living organisms.

Comments
Unfortunately, HGT screws up evolutionary estimates for time scales (HGT acts as a shortcut). But don't worry. Darwinists simply cherry pick the data that conforms to their pet theory, which functioned as a racist 19th century rationale for colonialism and eugentics. But this and more is all described in Perry Marshall's Evolution 2.0 (https://evo2.org/), which has been widely ignored by academic fundamentalist Darwinism. Of the five or six evolutionary mechanisms he describes, Marshall claims that random mutation is the least effective (marginally effective) mechanism. Darwinists, since you're so sure of yourselves, you can win US $10 million here: (https://www.herox.com/evolution2.0), which states
No one knows how the first cell came about. But there’s a simpler, more fundamental question: Where did the information come from? An answer will trigger a quantum leap in Artificial Intelligence. This may be as big as the transistor or the discovery of DNA itself. A new $10 million prize seeks a definitive answer.
The independent judges are: George Church is a geneticist, molecular engineer, and chemist. He is Professor of Genetics at Harvard Medical School and Professor of Health Sciences and Technology at Harvard and MIT, and was a founding member of the Wyss Institute for Biologically Inspired Engineering at Harvard. Denis Noble is an Oxford Professor and a fellow of the Royal Society. He is editor of the society's journal Interface Focus and he holds a Commander of the British Empire medal from Queen Elizabeth. He organized the Royal Society’s 2016 conference “New Trends in Biological Evolution” in conjunction with the British Academy. He is president of the International Union of Physiological Sciences. Michael Ruse is a philosopher of science who specializes in the philosophy of biology. He is director of the Program in the Philosophy of the History of Science at Florida State University and author of numerous books including "Darwinism and Design", “The Cambridge History of Atheism” and “Science, Evolution and Religion”. So, no LAME EXCUSES. Claim your $10 million and shut us up! -QQuerius
September 22, 2022
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If you mean that HGT is consistent with the randomness asserted by neo-Darwinism, per Coppedge, that is still in debate
I have no idea what you are talking about If one analyzes what can happen to a genome, HGT is just one of the many sources of variation. HGT is completely compatible with Darwinian processes and ID which accepts both. It is just one of the many possible sources of variation that affect organisms. Darwinian processes are 1) variation - HGT is definitely that. 2) heritability- HGT is definitely heritable. 3) selection - it’s definitely possible the HGT may lead to more offspring. Absolutely nothing controversial and all accepted by ID. The issue is how frequently it happened. The answer is available with the right research. Because of the lack of adherents, my guess not very often. HGT will never cause Evolution since it affects the genome and the Evolution process lies elsewhere. It’s also too trivial. Aside: evolutionary biologist don’t care a rats rear end whether Evolution happened slowly or quickly. They only care that it happened naturally.jerry
September 22, 2022
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CD at 11, “exactly how organisms separated by millions of years of evolution are able to swap fully functional genes remains unclear.” Luck? Not credible. Not credible at all.relatd
September 22, 2022
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Sir Giles is right. This is another one of ID's broken record themes. The author of the OP tries to imply that HGT in some fashion undermines Neo-Darwinism and the tracing of common ancestry (i.e., common descent). Knowledge of horizonal gene transfer has been around since the 1930s. It doesn't challenge the phylogenetic tree; it just makes it a bit more complicated. Some biologists refer to it as the phylogenetic "bush." The core lineages are not affected by HGT. More important, HGT is actually being used as a tool to study phylogenetics and NS, including real time observation of gene acquisition. This from Wiki:
While HGT is often seen as a challenge for the reconstruction of the tree of life, an alternative view is that oppositely it provides additional valuable information for its reconstruction. First, for the recipient organism, HGT is a DNA mutation like others [Sir Giles’ point] and as such, it can be modeled and used in tree reconstruction and rooting. Second, it is necessary that the recipient of a gene acquisition by HGT lives at the same time, or at an ulterior time, as the donor. In consequence there is an information on the timing of diversification in HGT. This is all the more remarkable since the principal usual source for dating in the living world, the fossil record, is absent precisely where HGT is abundant, in the microbial world. Third, it provides information about the extinct biodiversity, because transfers are likely from extinct species. (https://en.wikipedia.org/wiki/Horizontal_gene_transfer_in_evolution#The_use_of_horizontal_transfer_for_evolutionary_studies)
chuckdarwin
September 22, 2022
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So, I think the point is, that the concept of the common ancestor becomes even less meaningful. Andrewasauber
September 22, 2022
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ES at 8, Darwinism does something? By accident? Not very good I'd say. HGT happens quickly and the transfer means a transfer - not evolution by blind, unguided chance.relatd
September 22, 2022
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Darwinism doesn't require that the inheritable changes be caused by any specific mechanism.EvilSnack
September 22, 2022
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With HGT you have large changes and NO evolution–just transfer
If it is acted on by selection then it is evolution as Darwin proposed. I really don’t see why ID keeps bringing this up. It doesn’t support their opinion.Sir Giles
September 22, 2022
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Jerry @ 2: If you mean that HGT is consistent with the randomness asserted by neo-Darwinism, per Coppedge, that is still in debate. Yet, conceding the point, here is the huge problem for neo-Darwinism: what is 'ancestral' to what? IOW, how does this impact the already problematic area of phylogenetic trees? Where does this leave evolution? With HGT you have large changes and NO evolution--just transfer. Evolution, per Darwin, is 'gradual.' HGT is NOT 'gradual.' So, then, why call neo-Darwinism by that name if Darwin's theory--the one he proposed, and insisted upon, does not apply any longer?PaV
September 22, 2022
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Evolution is a hoax but the level of brainwashing among westerners is so high that majority are "afraid" to deny it not to look stupid. Well the choice is to agree with a lie or to look stupid chose your damn burden.Lieutenant Commander Data
September 22, 2022
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SG at 1, Evolution has no goals. Man is just an accident.relatd
September 22, 2022
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Jerry at 2, That's baloney. Pure baloney. Evolution has no brain, no goals, nothing.relatd
September 22, 2022
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HGT is completely consistent with Darwinian processes. Why this keeps coming up is a mystery since it’s been known for years. Just how much is this issue not that it happened. My guess, every now and then and changed very little. Could be determined with the right research.jerry
September 22, 2022
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I don’t see any significant implications to Darwinism. Darwinism only requires a source of heritable variation that natural selection can act on. In fact, it may explain some of the “rapid” changes that people here attempt to use as evidence against evolutionary theory.Sir Giles
September 22, 2022
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