Uncommon Descent Serving The Intelligent Design Community

The “beautiful mechanism” by which an egg becomes an embryo

Share
Facebook
Twitter
LinkedIn
Flipboard
Print
Email

From Phys.org:

The transition from an egg to a developing embryo is one of life’s most remarkable transformations. Yet little is known about it. Now Whitehead Institute researchers have deciphered how one aspect—control of the all-important translation of messenger RNAs (mRNAs) into proteins—switches as the egg becomes an embryo. That shift is controlled by a beautiful mechanism, which is triggered at a precise moment in development and automatically shuts itself off after a narrow window of 20 to 90 minutes.

As an egg develops, it stockpiles mRNAs from the mother because it will not have time to create new mRNAs during the rapid development of a very early embryo. When fertilized the egg becomes an embryo, the stashed maternal mRNAs are pressed into service for a brief window before the embryo starts transcribing its own mRNAs. This change occurs very early; in humans, only two to four cell divisions occur before this transition is executed. Whitehead Member Terry Orr-Weaver studies the control of translation of maternal mRNAs in the model organism Drosophila, or the fruit fly, because its developmental strategy offers experimental advantages. More.

A reader writes to note that the “beautiful mechanism” is described as a

negative feedback loop,” with the same function as those designed in engineering control systems: Furthermore, the activity of PNG kinase leads to the destruction of GNU, and this feedback loop limits this kinase’s activity to the narrow window of time in which it is needed.

“Active PNG leads to decreased GNU protein levels. This makes a negative feedback to shut down PNG kinase activity, thereby ensuring PNG kinase activity is constrained to the short developmental window of the oocyte-to-embryo transition

Another reader who forwarded this item points out that the authors let in the “d” word (and I don’t mean “Darwin”…. ):

The design of this transition could tell scientists more about how human cells work and embryos develop. For example, the switch could be a model for how cells massively and globally change mRNA translation. Also, similar kinase activity during early development has been noted in worms, which may mean that a comparable approach is used in other organisms, including humans.

Well, if the researchers’ careers take a beating for mentioning design, they will need to join the Free the Universities movement. After a while language Stalinism starts t collapse from its own uncommunicativeness and one must peak clearly again.

See also: Cells communicate to navigate a crowded embryo

Comments
The spinal cord (SC) is the part of the central nervous system (CNS) that is responsible for the motor, somato-sensory, and visceral innervation of the extremities, trunk, and large parts of the neck as well as all inner organs. Spinal nerves of the peripheral nervous system (PNS) serve as connections between the CNS and distal receptors and organs. And just as the SC controls many aspects of locomotion and visceral function, it also serves as an important relay station for incoming, afferent information from the periphery to central brain regions. It thus constitutes the major coordination hub for how humans unconsciously perceive their periphery and how our bodies react to this information, often involuntarily and without involvement of higher brain functions. And while the topography and cytoarchitecture of the human spinal cord is fairly well understood, the functional implications of some well-described structures remain elusive. Because of the central role the spinal cord plays in many forms of CNS impairment, a better understanding of the functional neuroanatomy of this structure is a prerequisite for addressing potential therapeutic approaches. This chapter gives an overview of spinal cord development, topography, cytoarchitecture, and functional assembly with a special focus on two aspects often compromised during spinal cord injury, namely, the control of micturition and the propriospinal neuron networks that hold great promise for the future improvement of therapies for patients suffering from spinal cord injury. Engelhardt, Maren & Sobotzik, Jürgen-Markus. (2017). Functional Neuroanatomy of the Spinal Cord. Neurological Aspects of Spinal Cord Injury. 19-60. 10.1007/978-3-319-46293-6_2.Dionisio
January 31, 2018
January
01
Jan
31
31
2018
06:34 AM
6
06
34
AM
PDT
Background Genome and transcriptome sequencing has greatly facilitated the understanding of biomass-degrading mechanisms in a number of fungal species. The information obtained enables the investigation and discovery of genes encoding proteins involved in plant cell wall degradation, which are crucial for saccharification of lignocellulosic biomass in second-generation biorefinery applications. The thermophilic fungus Malbranchea cinnamomea is an efficient producer of many industrially relevant enzymes and a detailed analysis of its genomic content will considerably enhance our understanding of its lignocellulolytic system and promote the discovery of novel proteins. ResultsThe 25-million-base-pair genome of M. cinnamomea FCH 10.5 was sequenced with 225× coverage. A total of 9437 protein-coding genes were predicted and annotated, among which 301 carbohydrate-active enzyme (CAZyme) domains were found. The putative CAZymes of M. cinnamomea cover cellulases, hemicellulases, chitinases and pectinases, equipping the fungus with the ability to grow on a wide variety of biomass types. Upregulation of 438 and 150 genes during growth on wheat bran and xylan, respectively, in comparison to growth on glucose was revealed. Among the most highly upregulated CAZymes on xylan were glycoside hydrolase family GH10 and GH11 xylanases, as well as a putative glucuronoyl esterase and a putative lytic polysaccharide monooxygenase (LPMO). AA9-domain-containing proteins were also found to be upregulated on wheat bran, as well as a putative cutinase and a protein harbouring a CBM9 domain. Several genes encoding secreted proteins of unknown function were also more abundant on wheat bran and xylan than on glucose. Conclusions The comprehensive combined genome and transcriptome analysis of M. cinnamomea provides a detailed insight into its response to growth on different types of biomass. In addition, the study facilitates the further exploration and exploitation of the repertoire of industrially relevant lignocellulolytic enzymes of this fungus. Hüttner, Silvia & Thuy Nguyen, Thanh & Granchi, Zoraide & Chin-A-Woeng, Thomas & Ahrén, Dag & Larsbrink, Johan & Thanh, Vu & Olsson, Lisbeth. (2017). Combined genome and transcriptome sequencing to investigate the plant cell wall degrading enzyme system in the thermophilic fungus Malbranchea cinnamomea. Biotechnology for Biofuels. 10. . 10.1186/s13068-017-0956-0.Dionisio
January 31, 2018
January
01
Jan
31
31
2018
06:31 AM
6
06
31
AM
PDT
In the past decade, various transcriptional activators of cellulolytic enzyme genes have been identified in Ascomycete fungi. The regulatory system of cellulolytic enzymes is not only partially conserved, but also significantly diverse. For example, Trichoderma reesei has a system distinct from those of Aspergillus and Neurospora crassa—the former utilizes Xyr1 (the Aspergillus XlnR ortholog) as the major regulator of cellulolytic enzyme genes, while the latter uses CLR-2/ClrB/ManR orthologs. XlnR/Xyr1 and CLR-2/ClrB/ManR are evolutionarily distant from each other. Regulatory mechanisms that are controlled by CLR-2, ClrB, and ManR are also significantly different, although they are orthologous factors. Expression of clr-2 requires the activation of another transcription factor, CLR-1, by cellobiose, while CLR-2 is constitutively active for transactivation. By contrast, ClrB activation requires cellobiose. While ClrB mainly regulates cellulolytic genes, ManR is essential for the activation of not only cellulolytic but also mannanolytic enzyme genes. In this review, we summarize XlnR/Xyr1- and CLR-2/ClrB/ManR-dependent regulation in N. crassa, A. nidulans, A. oryzae, and T. reesei and emphasize the conservation and diversity of the regulatory systems for cellulolytic enzyme genes in these Ascomycete fungi. In addition, we discuss the role of McmA, another transcription factor that plays an important role in recruiting ClrB to the promoters in A. nidulans. Kunitake, Emi & Kobayashi, Tetsuo. (2017). Conservation and diversity of the regulators of cellulolytic enzyme genes in Ascomycete fungi. Current Genetics. 63. . 10.1007/s00294-017-0695-6.Dionisio
January 31, 2018
January
01
Jan
31
31
2018
06:29 AM
6
06
29
AM
PDT
For identifying the genes that are regulated by a transcription factor (TF), we have established an analytical pipeline that combines genomic systematic evolution of ligands by exponential enrichment (gSELEX)-Seq and RNA-Seq. Here, SELEX was used to select DNA fragments from an Aspergillus nidulans genomic library that bound specifically to AmyR, a TF from A. nidulans. High-throughput sequencing data were obtained for the DNAs enriched through the selection, following which various in silico analyses were performed. Mapping reads to the genome revealed the binding motifs including the canonical AmyR-binding motif, CGGN8CGG, as well as the candidate promoters controlled by AmyR. In parallel, differentially expressed genes related to AmyR were identified by using RNA-Seq analysis with samples from A. nidulans WT and amyR deletant. By obtaining the intersecting set of genes detected using both gSELEX-Seq and RNA-Seq, the genes directly regulated by AmyR in A. nidulans can be identified with high reliability. This analytical pipeline is a robust platform for comprehensive genome-wide identification of the genes that are regulated by a target TF. Kojima, Takaaki & Kunitake, Emi & Ihara, Kunio & Kobayashi, Tetsuo & Nakano, Hideo. (2016). A Robust Analytical Pipeline for Genome-Wide Identification of the Genes Regulated by a Transcription Factor: Combinatorial Analysis Performed Using gSELEX-Seq and RNA-Seq. PLOS ONE. 11. e0159011. 10.1371/journal.pone.0159011.Dionisio
January 31, 2018
January
01
Jan
31
31
2018
06:28 AM
6
06
28
AM
PDT
Convolutionary neural networks (CNN) has been widely used for DNA motif discovery due to its high accuracy. To employ CNN for DNA motif discovery task, the input DNA sequences are required to be encoded as numerical values and represented as either vector or multi-dimensional matrix. This paper evaluates the simple and more compact ordinal encoding method versus the popular one-hot encoding for DNA sequences. We compare the performances of both encoding methods using three sets of datasets enriched with DNA motifs. We found that the ordinal encoding performs comparable to the one-hot encoding method but with significant reduction in training time. In addition, the one-hot encoding performance is quite consistent across various datasets but would require suitable CNN configuration to perform well. The ordinal encoding with matrix representation performs best in some of the evaluated datasets. This study implies that the performance of CNN for DNA motif discovery depends on the suitable design of the sequence encoding and representation. In addition, the CNN architecture and configuration require some tuning to suit different encoding methods. Choong, Allen & Lee, Nung Kion. (2017). Evaluation of Convolutionary Neural Networks Modeling of DNA Sequences using Ordinal versus one-hot Encoding Method. BIORXIV/2017/186965. . 10.1101/186965.Dionisio
January 31, 2018
January
01
Jan
31
31
2018
06:22 AM
6
06
22
AM
PDT
Background Enhancers are DNA regulatory elements that influence gene expression. There is substantial diversity in enhancers’ activity patterns: some enhancers drive expression in a single cellular context, while others are active across many. Sequence characteristics, such as transcription factor (TF) binding motifs, influence the activity patterns of regulatory sequences; however, the regulatory logic through which specific sequences drive enhancer activity patterns is poorly understood. Recent analysis of Drosophila enhancers suggested that short dinucleotide repeat motifs (DRMs) are general enhancer sequence features that drive broad regulatory activity. However, it is not known whether the regulatory role of DRMs is conserved across species. Results We performed a comprehensive analysis of the relationship between short DNA sequence patterns, including DRMs, and human enhancer activity in 38,538 enhancers across 411 different contexts. In a machine-learning framework, the occurrence patterns of short sequence motifs accurately predicted broadly active human enhancers. However, DRMs alone were weakly predictive of broad enhancer activity in humans and showed different enrichment patterns than in Drosophila. In general, GC-rich sequence motifs were significantly associated with broad enhancer activity, and consistent with this enrichment, broadly active human TFs recognize GC-rich motifs. Conclusions Our results reveal the importance of specific sequence motifs in broadly active human enhancers, demonstrate the lack of evolutionary conservation of the role of DRMs, and provide a computational framework for investigating the logic of enhancer sequences. Electronic supplementary material The online version of this article (doi:10.1186/s12864-017-3934-9) contains supplementary material, which is available to authorized users. L. Colbran, Laura & Chen, Ling & A. Capra, John. (2017). Short DNA sequence patterns accurately identify broadly active human enhancers. BMC Genomics. 18. . 10.1186/s12864-017-3934-9.Dionisio
January 31, 2018
January
01
Jan
31
31
2018
06:18 AM
6
06
18
AM
PDT
Proteins in the form of transcription factors (TFs) bind to specific DNA sites that regulate cell growth, differentiation, and cell development. The interactions between proteins and DNA are important toward maintaining and expressing genetic information. Without knowing TFs structures and DNA-binding properties, it is difficult to completely understand the mechanisms by which genetic information is transferred between DNA and proteins. The increasing availability of structural data on protein-DNA complexes and recognition mechanisms provides deeper insights into the nature of protein-DNA interactions and therefore, allows their manipulation. TFs utilize different mechanisms to recognize their cognate DNA (direct and indirect readouts). In this review, we focus on these recognition mechanisms as well as on the analysis of the DNA-binding domains of stem cell TFs, discussing the relative role of various amino acids toward facilitating such interactions. Unveiling such mechanisms will improve our understanding of the molecular pathways through which TFs are involved in repressing and activating gene expression. Yesudhas, Dhanusha & Batool, Maria & Anwar, Muhammad Ayaz & Panneerselvam, Suresh & Choi, Sangdun. (2017). Proteins Recognizing DNA: Structural Uniqueness and Versatility of DNA-Binding Domains in Stem Cell Transcription Factors. Genes. 8. . 10.3390/genes8080192.Dionisio
January 31, 2018
January
01
Jan
31
31
2018
05:57 AM
5
05
57
AM
PDT
@385-392: juicy Auxin minimum triggers the developmental switch from cell division to cell differentiation in the Arabidopsis root.Dionisio
November 16, 2017
November
11
Nov
16
16
2017
01:12 AM
1
01
12
AM
PDT
It is no longer necessary to demonstrate that ribosome is the central machinery of protein synthesis. But it is less known that it is also key player of the protein folding process through another conserved function: the protein folding activity of the ribosome (PFAR). This ribozyme activity, discovered more than 2 decades ago, depends upon the domain V of the large rRNA within the large subunit of the ribosome. Surprisingly, we discovered that anti-prion compounds are also potent PFAR inhibitors, highlighting an unexpected link between PFAR and prion propagation. In this review, we discuss the ancestral origin of PFAR in the light of the ancient RNA world hypothesis. We also consider how this ribosomal activity fits into the landscape of cellular protein chaperones involved in the appearance and propagation of prions and other amyloids in mammals. Finally, we examine how drugs targeting the protein folding activity of the ribosome could be active against mammalian prion and other protein aggregation-based diseases, making PFAR a promising therapeutic target for various human protein misfolding diseases.
The double life of the ribosome: When its protein folding activity supports prion propagation. Voisset C1, Blondel M1, Jones GW2, Friocourt G1, Stahl G3, Chédin S4, Béringue V5, Gillet R6. Prion. 11(2):89-97. doi: 10.1080/19336896.2017.1303587.
Complex functionally specified informational complexityDionisio
November 14, 2017
November
11
Nov
14
14
2017
04:06 PM
4
04
06
PM
PDT
[...] different mechanisms pattern the anterior domain of the follicle cells. [...] dad and dpp are regulated by BMP and EGFR signaling, respectively. [...] the two anterior CRMs are regulated by different signaling pathways [...] [...] the dpp driver is expressed earlier than the dad driver [...] [...] a follow-up study on the activation/repression of these drivers is needed [...] In the future, it will be interesting to determine whether each gene’s endogenous promoter and 3? UTR play a role in the patterning of the corresponding genes.
Simple Expression Domains Are Regulated by Discrete CRMs During Drosophila Oogenesis Nicole T. Revaitis, Robert A. Marmion, Maira Farhat, Vesile Ekiz, Wei Wang and Nir Yakoby G3: Genes, Genomes, Genetics August 1, 2017 vol. 7 no. 8 2705-2718; https://doi.org/10.1534/g3.117.043810
Complex functionally specified informational complexityDionisio
November 13, 2017
November
11
Nov
13
13
2017
08:58 AM
8
08
58
AM
PDT
The spatiotemporal control of gene expression is a fundamental requirement for animal development [...] [...] our understanding of how genes are regulated in time and space is still limited [...] Further analysis is needed to determine whether brU functions during br expression in the genomic context. Further analysis is required to determine the repression mechanism(s) of brRF in the dorsal midline and anterior domains. Understanding the regulatory mechanisms of br may shed light on the evolution of eggshell morphologies (Pyrowolakis et al. 2017).
Simple Expression Domains Are Regulated by Discrete CRMs During Drosophila Oogenesis Nicole T. Revaitis, Robert A. Marmion, Maira Farhat, Vesile Ekiz, Wei Wang and Nir Yakoby G3: Genes, Genomes, Genetics August 1, 2017 vol. 7 no. 8 2705-2718; https://doi.org/10.1534/g3.117.043810
What they have to understand is the fundamental evo-devo problem formulated thus: Dev(d) = Dev(a) + Delta(a,d) Where, Dev(a) is the entire developmental process of the ancestor 'a' Dev(d) is the entire developmental process of the descendant 'd' Delta(a,d) is the collection of all the required spatiotemporal changes in Dev(a) in order to get Dev(d). Note that entire developmental process includes the whole enchilada, i.e. all the ingredients and cooking recipes. Complex functionally specified informational complexityDionisio
November 13, 2017
November
11
Nov
13
13
2017
08:19 AM
8
08
19
AM
PDT
Eggshell patterning has been extensively studied in Drosophila melanogaster. However, the cis-regulatory modules (CRMs), which control spatiotemporal expression of these patterns, are vastly unexplored. [...] complex gene patterns are assembled combinatorially by different CRMs controlling the expression of genes in simple domains.
Simple Expression Domains Are Regulated by Discrete CRMs During Drosophila Oogenesis Nicole T. Revaitis, Robert A. Marmion, Maira Farhat, Vesile Ekiz, Wei Wang and Nir Yakoby G3: Genes, Genomes, Genetics August 1, 2017 vol. 7 no. 8 2705-2718; https://doi.org/10.1534/g3.117.043810
Complex functionally specified informational complexityDionisio
November 13, 2017
November
11
Nov
13
13
2017
07:25 AM
7
07
25
AM
PDT
Surprisingly though, there is no systematic analysis leading to definition of a reference cistrome and to identification of the differential activity of ER? in different experimental contexts and with different ligands or, notably, in absence of estrogen as we reported previously15 and that represents possibly one of the most puzzling activity of this TR.
Dissecting the genomic activity of a transcriptional regulator by the integrative analysis of omics data Giulio Ferrero,1,2,3 Valentina Miano,1,3 Marco Beccuti,2 Gianfranco Balbo,1,2 Michele De Bortoli,corresponding author1,3 and Francesca Cordero1,2 Sci Rep. 2017; 7: 8564. doi: 10.1038/s41598-017-08754-9
Did somebody say 'Surprisingly'? Did somebody say 'puzzling'? Complex functionally specified informational complexityDionisio
November 13, 2017
November
11
Nov
13
13
2017
06:04 AM
6
06
04
AM
PDT
DNA regulatory regions represent an important part of the genome, where DNA binding Transcription Factors (TF) and a large number of co-regulators cooperate to convey cellular information and control gene activity. Recent genome-wide analyses, conducted by ENCODE and other projects in a variety of cell lines and tissues, led to the unexpected observation that distant or proximal non-promotorial regulatory regions, defined as enhancers, outnumber gene promoters by a factor of ten1. They appear to serve in a developmentally-regulated fashion, and only a fraction of them is poised or active in a defined cell type at any specific time.
Dissecting the genomic activity of a transcriptional regulator by the integrative analysis of omics data Giulio Ferrero,1,2,3 Valentina Miano,1,3 Marco Beccuti,2 Gianfranco Balbo,1,2 Michele De Bortoli,corresponding author1,3 and Francesca Cordero1,2 Sci Rep. 2017; 7: 8564. doi: 10.1038/s41598-017-08754-9
Did somebody say 'unexpected'? Complex functionally specified informational complexityDionisio
November 13, 2017
November
11
Nov
13
13
2017
05:57 AM
5
05
57
AM
PDT
Much work remains to be done to characterize the regulatory sequences and their control by transcription factors. Furthermore, some of the important players, most notably the activators, are yet to be identified and placed within the existing network. [...] it will be very interesting to see whether a change in a single enhancer is sufficient to change both the expression pattern of BR and the number of dorsal appendages. [...] it is important to keep in mind the mechanisms that rely on the intracellular modulation of inductive signals. [...] GRK induces several negative feedback loops that modulate the signals sensed by the enhancers of the genes within the patterning network [...] One of the most exciting directions for future studies is related to the mechanistic analysis and experimental validation of the computational models that can explain the remarkable morphological diversity of eggshell structures. In the future, we envision a unified model that accounts for multiple processes, from inductive signals to enhancers, and can generate all of the observed eggshell morphologies by variations of model parameters and sequence variations.
Gene regulation during Drosophila eggshell patterning George Pyrowolakis, Ville Veikkolainen, Nir Yakoby, and Stanislav Y. Shvartsman PNAS vol. 114 no. 23 5808–5813, doi: 10.1073/pnas.1610619114
Work in progress... stay tuned. Complex functionally specified informational complexityDionisio
November 13, 2017
November
11
Nov
13
13
2017
04:45 AM
4
04
45
AM
PDT
It appears that cis-regulatory changes can account for only some aspects of the morphological diversity of Drosophila eggshells, such as the prominent differences in the number of the respiratory dorsal appendages. Other changes, such as the appearance of the respiratory eggshell ridges, are caused by changes in the spatial distribution of inductive signals. Both types of mechanisms are at play in this rapidly evolving system, which provides an excellent model of developmental patterning and morphogenesis.
Gene regulation during Drosophila eggshell patterning George Pyrowolakis, Ville Veikkolainen, Nir Yakoby, and Stanislav Y. Shvartsman PNAS vol. 114 no. 23 5808–5813, doi: 10.1073/pnas.1610619114
Complex functionally specified informational complexityDionisio
November 13, 2017
November
11
Nov
13
13
2017
04:28 AM
4
04
28
AM
PDT
A common path to the formation of complex 3D structures starts with an epithelial sheet that is patterned by inductive cues that control the spatiotemporal activities of transcription factors. These activities are then interpreted by the cis-regulatory regions of the genes involved in cell differentiation and tissue morphogenesis. [...] the range of experimental models in which each of the steps can be examined in detail and evaluated in its effect on the final structure remains very limited. Studies of the Drosophila eggshell patterning provide unique insights into the multiscale mechanisms that connect gene regulation and 3D epithelial morphogenesis.
Gene regulation during Drosophila eggshell patterning George Pyrowolakis, Ville Veikkolainen, Nir Yakoby, and Stanislav Y. Shvartsman PNAS vol. 114 no. 23 5808–5813, doi: 10.1073/pnas.1610619114
Complex functionally specified informational complexityDionisio
November 13, 2017
November
11
Nov
13
13
2017
04:07 AM
4
04
07
AM
PDT
One core PCP protein, VANGL2, is proposed to be a key molecule determining the direction of ameloblast movement.
Cytoskeleton, intercellular junctions, planar cell polarity, and cell movement in amelogenesis Sumio Nishikawa Journal of Oral Biosciences Volume 59, Issue 4, Pages 197-204 https://doi.org/10.1016/j.job.2017.07.002
Complex functionally specified informational complexityDionisio
November 8, 2017
November
11
Nov
8
08
2017
01:49 PM
1
01
49
PM
PDT
[...] we have emphasized several principles common to PCP-mediated cell movements during development but there are clearly many open questions. [...] it should be noted that many other cell movements and axon guidance events have been shown to involve some, but not other, core PCP components. It thus remains to be determined whether any of the principles we have described here hold true in those contexts. [...] it remains an important goal to validate these findings by studying endogenous PCP components.
Planar cell polarity in moving cells: think globally, act locally Crystal F. Davey, Cecilia B. Moens Development 2017 144: 187-200; doi: 10.1242/dev.122804
Work in progress... stay tuned. Complex functionally specified informational complexityDionisio
November 8, 2017
November
11
Nov
8
08
2017
11:06 AM
11
11
06
AM
PDT
[...] the effectors of PCP that regulate actomyosin contractility in collectively moving cells are frequently the same multifunctional effectors that regulate actin assembly downstream of PCP in individually migrating cells. What determines how these conserved PCP effectors influence diverse migratory cell behaviors downstream of PCP signaling will be a topic of future research.
Planar cell polarity in moving cells: think globally, act locally Crystal F. Davey, Cecilia B. Moens Development 2017 144: 187-200; doi: 10.1242/dev.122804
Work in progress... stay tuned. Complex functionally specified informational complexityDionisio
November 8, 2017
November
11
Nov
8
08
2017
12:42 AM
12
12
42
AM
PDT
Differential recruitment of vertebrate-specific PCP-associated proteins such as Ptk7, Ror2, Knypek and others in specific cell movement contexts might also influence the activities of PCP core components in as-yet-undiscovered ways.
Planar cell polarity in moving cells: think globally, act locally Crystal F. Davey, Cecilia B. Moens Development 2017 144: 187-200; doi: 10.1242/dev.122804
Complex functionally specified informational complexityDionisio
November 8, 2017
November
11
Nov
8
08
2017
12:36 AM
12
12
36
AM
PDT
Different directional cues in the embryo – a diffusible Wnt ligand for commissural axons versus local polarity cues on nearby neuroepithelial progenitors for migrating facial motor neurons – might determine how PCP signaling is transduced within cellular protrusions to influence migration.
Planar cell polarity in moving cells: think globally, act locally Crystal F. Davey, Cecilia B. Moens Development 2017 144: 187-200; doi: 10.1242/dev.122804
Complex functionally specified informational complexityDionisio
November 8, 2017
November
11
Nov
8
08
2017
12:30 AM
12
12
30
AM
PDT
Indeed, the PCP pathway regulates a variety of processes during development, from the coordinated orientation of cells and cell divisions across an epithelium, and the orientation of multicellular epithelial structures such as the mammalian hair follicle or the fly eye, to the directional movements of motile cells across developing vertebrate embryos. All of these processes require a core group of membrane-associated proteins that regulate each other's localization and the organization of the cytoskeleton.
Planar cell polarity in moving cells: think globally, act locally Crystal F. Davey, Cecilia B. Moens Development 2017 144: 187-200; doi: 10.1242/dev.122804
Complex functionally specified informational complexityDionisio
November 7, 2017
November
11
Nov
7
07
2017
11:48 PM
11
11
48
PM
PDT
The planar cell polarity (PCP) pathway is best known for its role in polarizing epithelial cells within the plane of a tissue but it also plays a role in a range of cell migration events during development. The mechanism by which the PCP pathway polarizes stationary epithelial cells is well characterized, but how PCP signaling functions to regulate more dynamic cell behaviors during directed cell migration is much less understood.
Planar cell polarity in moving cells: think globally, act locally Crystal F. Davey, Cecilia B. Moens Development 2017 144: 187-200; doi: 10.1242/dev.122804
Complex functionally specified informational complexityDionisio
November 7, 2017
November
11
Nov
7
07
2017
11:21 PM
11
11
21
PM
PDT
[...] it is tempting to speculate that hmmr participates in neural morphogenesis by influencing the stability and / or dynamics of MTs. It will be interesting to test whether the same holds true for mammalian embryos [...] In summary, our work has revealed a novel in vivo function of hmmr in anterior neural morphogenesis and NTC, that may have important implications for tissue integrity in the developing and adult human.
hmmr mediates anterior neural tube closure and morphogenesis in the frog Xenopus Angela Prager, Cathrin Hagenlocher, Tim Ott, Alexandra Schambony, Kerstin Feistel Developmental Biology Volume 430, Issue 1, 1 October 2017, Pages 188–201
Complex functionally specified informational complexityDionisio
November 7, 2017
November
11
Nov
7
07
2017
11:10 PM
11
11
10
PM
PDT
Neurulation is the process in which a flat neural plate generates folds that elevate, converge medially and fuse in the midline, creating a closed neural tube. Rostrally, the neural tube will go on to differentiate into the future brain while the caudal part continues to develop into the spinal cord. The morphogenesis of neural tube closure (NTC) requires the concerted action of cell shape changes together with cell polarization, migration and intercalation
hmmr mediates anterior neural tube closure and morphogenesis in the frog Xenopus Angela Prager, Cathrin Hagenlocher, Tim Ott, Alexandra Schambony, Kerstin Feistel Developmental Biology Volume 430, Issue 1, 1 October 2017, Pages 188–201
Did somebody say 'concerted action'? Complex functionally specified informational complexityDionisio
November 7, 2017
November
11
Nov
7
07
2017
10:40 PM
10
10
40
PM
PDT
Development of the central nervous system requires orchestration of morphogenetic processes which drive elevation and apposition of the neural folds and their fusion into a neural tube. Our results pinpoint a novel role of hmmr in anterior neural development and support the notion that RI is a major driving force for anterior neurulation and forebrain morphogenesis.
hmmr mediates anterior neural tube closure and morphogenesis in the frog Xenopus Angela Prager, Cathrin Hagenlocher, Tim Ott, Alexandra Schambony, Kerstin Feistel Developmental Biology Volume 430, Issue 1, 1 October 2017, Pages 188–201
Did somebody say 'orchestration'? Complex functionally specified informational complexityDionisio
November 7, 2017
November
11
Nov
7
07
2017
10:35 PM
10
10
35
PM
PDT
Supporting cells, which retain contact with the basement membrane, exhibit biased protrusive activity and directed movement along the axis of extension. By contrast, hair cells lose contact with the basement membrane, but contribute to continued outgrowth through increased cell size. Regulation of cellular protrusions, movement and intercalation within the cochlea all require myosin II. These results establish, for the first time, many of the cellular processes that drive the distribution of sensory cells along the tonotopic axis of the cochlea.
Cell migration, intercalation and growth regulate mammalian cochlear extension Elizabeth Carroll Driver, Amy Northrop, Matthew W. Kelley Development 2017 144: 3766-3776; doi: 10.1242/dev.151761
Complex functionally specified informational complexityDionisio
November 7, 2017
November
11
Nov
7
07
2017
10:22 PM
10
10
22
PM
PDT
Developmental remodeling of the sensory epithelium of the cochlea is required for the formation of an elongated, tonotopically organized auditory organ, but the cellular processes that mediate these events are largely unknown. [...] the cochlea extends through a combination of radial intercalation and cell growth. [...] concomitant cellular intercalation results in a brief period of epithelial convergence, although subsequent changes in cell size lead to medial-lateral spreading.
Cell migration, intercalation and growth regulate mammalian cochlear extension Elizabeth Carroll Driver, Amy Northrop, Matthew W. Kelley Development 2017 144: 3766-3776; doi: 10.1242/dev.151761
Complex functionally specified informational complexityDionisio
November 7, 2017
November
11
Nov
7
07
2017
10:20 PM
10
10
20
PM
PDT
[...] Afadin regulates apical-basal polarity, adherens junctions, and mitotic spindle orientation in radial glial cells in the developing cerebral cortex. [...] Afadin regulates mitotic division orientation of radial glial cells. The relationships between Afadin, epithelial cell polarity, adherens junctions, and mitotic spindle orientation are complex.
Afadin controls cell polarization and mitotic spindle orientation in developing cortical radial glia Jennifer Rakotomamonjy, Molly Brunner, Christoph Jüschke, Keling Zang, Eric J. Huang, Louis F. Reichardt, Anjen Chen Neural Dev (2017) 12: 7. https://doi.org/10.1186/s13064-017-0085-2
Complex functionally specified informational complexityDionisio
November 7, 2017
November
11
Nov
7
07
2017
09:58 PM
9
09
58
PM
PDT
1 2 3 15

Leave a Reply