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A liberating voice on the feathered dragons

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Evolution: Education and Outreach is usually a disappointment. The journal could do with more philosophically savvy writers and more critical reviewers. The various contributions provide very little evidence that they understand Kuhn’s thesis about the way science develops. Most of the authors are working in a silo and fail to understand anyone who operates outside their tightly defined paradigm. A notable exception was Daniel R. Brooks (2011) who wrote on “The Extended Synthesis: Something Old, Something New” (blogged here). Another is the theme of this blog: a review of Alan Feduccia’s “Riddle of the Feathered Dragons” by Egbert Giles Leigh Jr. What caught my eye was the acknowledgement that Feduccia provides a “powerful criticism of prevailing views of bird evolution”. Leigh explains that he is relatively new to this theme, and he appears shocked to find out what an intense battlefield he was entering.

“I was blissfully unaware of the raging dispute over just what group of reptiles gave rise to birds. The introduction, which opens with bitter comments on uncritical media hype about dinosaur ‘discoveries’, and the first chapter, subtitled ‘Blame to Go Around’, cured me rather brutally of that ignorance.” (p.1)

Leigh summarises the arguments of John Ostrom, who championed the thesis that birds evolved from theropod dinosaurs. He knew that dinosaurs like Deinonychus had many similarities with Archaeopteryx, and he promoted the idea that flight evolved ground up. The ancestors of birds were considered to be runners, flapping their forelimbs to catch insects, thereby evolving the functionality for flapping flight. Leigh reports Feduccia’s objections to Ostrom, obviously impressed by his arguments, and noting that “More recently, the tide of evidence has turned strongly against Ostrom’s case.” Part of this evidence relates to protofeathers, and Leigh is positive about the case for them being collagen fibres. (For further on this, go here and here.)

“The discovery that the ‘protofeathers’ of the bipedal, cursorial theropod Sinosauropteryx were collagen fibers representing various stages of skin decay (Lingham-Soliar et al. 2007) undermined the argument that feathers evolved for purposes other than flight. If Anchiornis and Archaeopteryx were ancestral birds, it would appear that that feathers, which Feduccia shows to be complex, intricate structures well adapted for flight, evolved for that purpose. Feathered wings did not first evolve to be clapped together to catch insects, as Ostrom (1974, 1979) had proposed.” (p.2)

The reason why this is important relates to the major point being made by Leigh: “The argument between Feduccia and Ostrom was later engulfed by a methodological one.” This methodological issue concerns cladism. Rarely does one read words like this:

“This method seemed to lend an objective rigor to inferring phylogenies from phenotypic data. Many practitioners of this method proclaim that birds derive from theropod dinosaurs.” (p.2)

What follows is one of the best concise critiques of cladism that I have read. It deserves to be quoted in full, but this seems unwise – especially as the review is Open Access. The issue of protofeathers is located at the beginning of the critique. If they are interpreted as primitive feathers, they constrain the cladistic analysis towards the theropod-bird evolutionary pathway. If however they represent collagen fibres released during skin decay, the outcome is quite different. Leigh sees this as an example of scientists craving for an objectivity that brings authority, latching on to a method that seems to offer this, and losing sight of other data that disturbs their conclusions.

“More generally, the search for the one objective scientific method, where subjective judgments play no role, is a recipe for ignoring what is crucial. So it was for the psychologists who saw stimulus-response analyses as the way to make animal behavior an objective science by avoiding the subjective world of consciousness. As Changeux (1985, p. 97) remarked, ‘Concerned with eliminating subjectivity from scientific observation, behaviorism restricted itself to considering the relationship between variations in the environment (the stimulus) and the motor response that was provoked’. This approach does not let us see that animals have intentions and project their hypotheses onto the external world (Changeux and Ricoeur 2000, p. 42). Is this also true of those cladists who see a particular algorithm for inferring phylogenies from phenotypic data as the one way to practice objective taxonomy? Such methods demand that their practitioners ignore those kinds of data that their methods cannot handle. Indeed, as in the case of scientific Marxism, supposed recipes for objectivity can become dogmas defended with religious zeal (Polanyi 1962, pp. 227-228). Feduccia (p. 2) cites instances of this process among some cladists. This process can discourage interesting science, as did the Roman inquisition of the 17th century (Changeux and Ricoeur 2000, p. 35). Feyerabend’s (1975) Against Method is a salutary warning against seeking one scientific method, apt for solving all problems.” (p.3)

In his concluding words, Leigh points to the BAD advocates (Birds Are Dinosaurs) as “intellectual prisoners of their cladistic methodology”. Although he represents the minority BAND (Birds Are Not Dinosaurs), and although the controversy is draining, Feduccia is presented as the champion of authentic science.

“[H]is book is eloquent testimony to the role of connoisseurship in effective science. For all its bitterness, Feduccia’s is a liberating voice, a reminder that methodology should be our servant, not our unquestioned master.” (p.3)

It’s a great review and it deserves to be widely read. This is not just a controversy over dino-fuzz – it has the potential to stimulate thinking about the way science is practised.

Alan Feduccia’s Riddle of the Feathered Dragons: what reptiles gave rise to birds?
Egbert Giles Leigh Jr
Evolution: Education and Outreach, March 2014, 7:9, (3 pages)

This book’s author is at home in the paleontology, anatomy, physiology, and behavior of birds. Who could be more qualified to write on their origin and evolution? This book is unusually, indeed wonderfully, well and clearly illustrated: its producers cannot be praised too highly. It is well worth the while of anyone interested in bird evolution to read it. [snip]

Comments
Moreover, as if that were not devastating enough as to undermining any credibility Natural Selection might have had as to having the causal adequacy to explain the highly integrated levels of overlapping functional information found in organisms, dimensionally speaking, Natural Selection is now known to not even be on the right playing field in the first place: The predominance of quarter-power (4-D) scaling in biology Excerpt: Many fundamental characteristics of organisms scale with body size as power laws of the form: Y = Yo M^b, where Y is some characteristic such as metabolic rate, stride length or life span, Yo is a normalization constant, M is body mass and b is the allometric scaling exponent. A longstanding puzzle in biology is why the exponent b is usually some simple multiple of 1/4 (4-Dimensional scaling) rather than a multiple of 1/3, as would be expected from Euclidean (3-Dimensional) scaling. http://www.nceas.ucsb.edu/~drewa/pubs/savage_v_2004_f18_257.pdf “Although living things occupy a three-dimensional space, their internal physiology and anatomy operate as if they were four-dimensional. Quarter-power scaling laws are perhaps as universal and as uniquely biological as the biochemical pathways of metabolism, the structure and function of the genetic code and the process of natural selection.,,, The conclusion here is inescapable, that the driving force for these invariant scaling laws cannot have been natural selection.” Jerry Fodor and Massimo Piatelli-Palmarini, What Darwin Got Wrong (London: Profile Books, 2010), p. 78-79 Here is, what a Darwinist termed, a ‘horrendously complex’ metabolic pathway (which operates as if it were ’4-Dimensional): ExPASy - Biochemical Pathways - interactive schematic http://web.expasy.org/cgi-bin/pathways/show_thumbnails.pl And remember, Darwinian evolution has yet to explain a single gene of those ‘horrendously complex’ metabolic pathways. "Charles Darwin said (paraphrase), 'If anyone could find anything that could not be had through a number of slight, successive, modifications, my theory would absolutely break down.' Well that condition has been met time and time again. Basically every gene, every protein fold. There is nothing of significance that we can show that can be had in a gradualist way. It's a mirage. None of it happens that way. - Doug Axe PhD. - Nothing In Molecular Biology Is Gradual - video http://www.metacafe.com/watch/5347797/ The reason why a ‘higher dimensional’ 4-Dimensional structure, such as a ‘horrendously complex metabolic pathway, would be, for all intents and purposes, completely invisible to a 3-Dimensional process, such as Natural Selection, is best illustrated by ‘flatland’: Flatland – 3D to 4D shift – Dr. Quantum – video http://www.youtube.com/watch?v=BWyTxCsIXE4 I personally hold that the reason why internal physiology and anatomy operate as if they were four-dimensional instead of three dimensional is because of exactly what Darwinian evolution has consistently failed to explain the origination of. i.e. functional information. ‘Higher dimensional’ information, which is bursting at the seams in life, simply cannot be reduced to any 3-dimensional energy-matter basis: John Lennox – Is There Evidence of Something Beyond Nature? (Semiotic Information) – video http://www.youtube.com/watch?v=F6rd4HEdffwbornagain77
May 30, 2014
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Piotr, I hate to burst you bubble since you seem to have so much of your heart invested in believing these just so stories you spout, but as far as empirical evidence itself is concerned, Natural Selection has been undermined as having the causal adequacy that neo-Darwinists have attributed to it. First off, to the extent that Natural Selection does do anything, Natural Selection is found to be a eliminative force not a generative force: "...but Natural Selection reduces genetic information and we know this from all the Genetic Population studies that we have..." Maciej Marian Giertych - Population Geneticist - member of the European Parliament - EXPELLED - Natural Selection And Genetic Mutations - video https://www.youtube.com/watch?v=6z5-15wk1Zk From a Frog to a Prince - video (17:00 minute mark Natural Selection Reduces Genetic Information) - No Beneficial Mutations - Gitt - Spetner - Denton - video https://www.youtube.com/watch?v=ClleN8ysimg&feature=player_detailpage#t=1031 "A Dutch zoologist, J.J. Duyvene de Wit, clearly demonstrated that the process of speciation (such as the appearance of many varieties of dogs and cats) is inevitably bound up with genetic depletion as a result of natural selection. When this scientifically established fact is applied to the question of whether man could have evolved from ape-like animals,'.. the transformist concept of progressive evolution is pierced in its very vitals.' The reason for this, J.J. Duyvene de Wit went on to explain, is that the whole process of evolution from animal to man " ' . . would have to run against the gradient of genetic depletion. That is to say, . . man )should possess] a smaller gene-potential than his animal ancestors! [I] Here, the impressive absurdity becomes clear in which the transformist doctrine [the theory of evolution] entangles itself when, in flat contradiction to the factual scientific evidence, it dogmatically asserts that man has evolved from the animal kingdom!" —Op. cit., pp. 129-130. [Italics his; quotations from *J.J. Duyvene de Wit, A New Critique of the Transformist Principle in Evolutionary Biology (1965), p. 56,57.] http://www.godrules.net/evolutioncruncher/2evlch15.htm "We found an enormous amount of diversity within and between the African populations, and we found much less diversity in non-African populations," Tishkoff told attendees today (Jan. 22) at the annual meeting of the American Association for the Advancement of Science in Anaheim. "Only a small subset of the diversity in Africa is found in Europe and the Middle East, and an even narrower set is found in American Indians." Tishkoff; Andrew Clark, Penn State; Kenneth Kidd, Yale University; Giovanni Destro-Bisol, University "La Sapienza," Rome, and Himla Soodyall and Trefor Jenkins, WITS University, South Africa, looked at three locations on DNA samples from 13 to 18 populations in Africa and 30 to 45 populations in the remainder of the world.- As well, Natural Selection is grossly inadequate to do the work required of it because of what is termed ‘the princess and the pea’ paradox. The devastating ‘princess and the pea’ paradox is clearly elucidated by Dr. John Sanford, at the 8:14 minute mark, of this following video,,, Genetic Entropy – Dr. John Sanford – Evolution vs. Reality – video http://vimeo.com/35088933 Dr. Sanford points out, in the preceding video, that Natural Selection acts at the coarse level of the entire organism (phenotype) and yet the vast majority of mutations have effects that are only ‘slightly detrimental’, and have no noticeable effect on phenotypes, and are thus far below the power of Natural Selection to remove from genomes before they spread throughout the population. “Selection Threshold Severely Constrains Capture of Beneficial Mutations” - John Sanford - September 6, 2013 Excerpt of concluding comments: Our findings raise a very interesting theoretical problem — in a large genome, how do the millions of low-impact (yet functional) nucleotides arise? It is universally agreed that selection works very well for high-impact mutations. However, unless some new and as yet undiscovered process is operating in nature, there should be selection breakdown for the great majority of mutations that have small impact on fitness.,,, We show that selection breakdown is not just a simple function of population size, but is seriously impacted by other factors, especially selection interference. We are convinced that our formulation and methodology (i.e., genetic accounting) provide the most biologically-realistic analysis of selection breakdown to date. http://www.worldscientific.com/doi/pdf/10.1142/9789814508728_0011 Here are a few more notes on this insurmountable ‘princess and the pea’ problem for natural selection: Evolution vs. Genetic Entropy - Andy McIntosh - video https://vimeo.com/91162565 The GS Principle (The Genetic Selection Principle) – Abel – 2009 Excerpt: The GS Principle, sometimes called “The 2nd Law of Biology,” states that selection must occur at the molecular/genetic level, not just at the fittest phenotypic/organismic level, to produce and explain life.,,, Natural selection cannot operate at the genetic level. http://www.bioscience.org/2009/v14/af/3426/fulltext.htmbornagain77
May 30, 2014
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BA77 Once you can fly and your reproductive success depends on it, it pays to do it better: the development of efficient flight accelerates, and adaptive evolution gives it a clear direction. We can see the effects very well in the fossil record.Piotr
May 30, 2014
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"then selection began to favour any changes improving flight" translation into common sense English: "Just add imagination and you get wings"bornagain77
May 30, 2014
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If adaptations don’t happen because an organism needs them, then how does that organism survive and reproduce, which is the entire point of evolution?
Because it's already the descendant of billions of ancestral generations, every single one of them fit enough to leave offspring. If it happens to be additionally the lucky carrier of an innate feature conferring a slight adaptive advantage, it has a slightly better chance of producing offspring with a similar slight advantage.
Feathers aren’t the only requirement for flying. Practically every part of a bird is designed for flight. Birds have light, hollow bones as well as an unusually efficient respiratory system and specialized muscles to flap and control its wings. It even has a number of muscles to control the position of individual feathers. And it has nerves that connect each muscle to the bird’s tiny but amazing brain, which is preprogrammed to control all these systems simultaneously, automatically, and precisely. The whole package–not just feathers–is necessary for flight.
Many of these features were already present in flightless theropods. They were originally adaptations to something else (skin insulation, fast metabolism, tree-climbing, chasing smaller prey, scurrying away from larger predators). They made parachuting, gliding or flapping flights possible, and then selection began to favour any changes improving flight.
Oh, and every bird develops from a tiny cell that contains the complete instructions for its growth and instincts, so that one day it can take to the sky. And evolution teaches that all this arose from a long string of advantageous accidents.
Yes, more or less.Piotr
May 30, 2014
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The ancestors of birds were considered to be runners, flapping their forelimbs to catch insects, thereby evolving the functionality for flapping flight.
stupid things evolutionists believeJehu
May 30, 2014
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Piotr writes,
Adaptations don’t happen because you need them. They have to be physically possible, and they are constrained by the random occurrence of mutations.
If adaptations don't happen because an organism needs them, then how does that organism survive and reproduce, which is the entire point of evolution? Feathers aren't the only requirement for flying. Practically every part of a bird is designed for flight. Birds have light, hollow bones as well as an unusually efficient respiratory system and specialized muscles to flap and control its wings. It even has a number of muscles to control the position of individual feathers. And it has nerves that connect each muscle to the bird’s tiny but amazing brain, which is preprogrammed to control all these systems simultaneously, automatically, and precisely. The whole package--not just feathers--is necessary for flight. Oh, and every bird develops from a tiny cell that contains the complete instructions for its growth and instincts, so that one day it can take to the sky. And evolution teaches that all this arose from a long string of advantageous accidents.Barb
May 30, 2014
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Barb @7: Adaptations don't happen because you need them. They have to be physically possible, and they are constrained by the random occurrence of mutations. No matter how heroically you flap your arms, your DNA won't be affected, and no effect of your flapping will be passed along to your offspring.Piotr
May 30, 2014
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wd400 @3: That seems to be the implication.Barb
May 30, 2014
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Ostrom wasn't right about every detail (and little wonder, considering that he had very scanty data at his disposal), but the core of his hypothesis remains correct: birds are a group nested within Theropoda. Wings are an example of exaptation: feathers developed before flight. They played other functions originally (and, by the way, still play them in modern birds). Flight was not the purpose of bird evolution; it became a fortuitous possibility for some small dinosaurs, and long pennaceous feathers were co-opted to generate aerodynamic lift and thrust.Piotr
May 30, 2014
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@Barb: I've been fapping at least 3 times a day. My biceps got stronger... I haven't developed any wings, though.JWTruthInLove
May 30, 2014
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darn. i better stop then. maybe i'll just try being good. then i can get some angel's wings.Mung
May 30, 2014
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Let me get this straight: an animal (or a human, presumably) flapping their arms long enough and hard enough will eventually, through natural selection acting on random mutations (beneficial mutations, no doubt), evolve wings? No.wd400
May 30, 2014
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The ancestors of birds were considered to be runners, flapping their forelimbs to catch insects, thereby evolving the functionality for flapping flight. Let me get this straight: an animal (or a human, presumably) flapping their arms long enough and hard enough will eventually, through natural selection acting on random mutations (beneficial mutations, no doubt), evolve wings?Barb
May 30, 2014
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This book’s author is at home in the paleontology, anatomy, physiology, and behavior of birds. Who could be more qualified to write on their origin and evolution?
There are lots of paleontologists who meet this description, and almost all of them disagree with Alan Feduccia. He is a good example of what happens if an otherwise good scientist fails to recognise the moment when his favourite hypothesis can't be reconciled with new data and had better be abandoned. He'd rather continue digging than leave his precious hole. Recently, he has begun to reduce his position ad absurdum, reinterpreting feathered theropods as "cryptic birds". One day, perhaps, he'll take the next logical step and declare all dinosaurs to be stem avians. If so, his BAND hypothesis will finally converge with the mainstream view (and he will have rediscovered the wheel). But make no mistake: although Feduccia doesn't believe that birds are dinosaurs, he believes that birds are "thecodonts", closely related to dinosaurs.Piotr
May 30, 2014
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