Ann Gauger of the Biologic Institute writes to say
Monday we published a paper in the journal BIO-Complexity that demonstrates that enzymes can’t evolve genuinely new functions by unguided means. We argue that design by a very sophisticated intelligent agent is the best explanation for their origin. I want to take some time to lay out our argument against evolution and for intelligent design. It’s important, because it reveals the logical fallacy in most evolutionary thinking. More.
Be grateful you live in a place where people are still permitted to lay out an argument against Darwin. Or magic.
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The paper can be found here:
Enzyme Families–Shared Evolutionary History or Shared Design? A Study of the GABA-Aminotransferase Family
News:
Denyse,
Are you aware of places where the citizens are no longer permitted to argue against Darwin?
Thanks. Seems like that’s the sort of thing you’d expect to find in the post.
Is there a place where people aren’t “permitted to lay out an argument against Darwinism,” and is that relevant to the news of someone making just such an argument? Or just another brick in the martyrdom narrative?
I read the longer version at the link, and I think Ann Gauger missed 1 thing: stasis.
We do in fact know quite a bit about ancient enzymes because we have dozens of examples of living, modern life that appear to be identical to fossils that are, depending on the species, 30 million to 400 million years old.
Are you allowed to argue against darwinism in the public schools?
Do you live in a public school?
So, since Darwinism is certainly not a real science with a rigid falsification criteria, it’s OK for the theologically based ‘pseudo-science’ of Darwinism to be taught without criticism in public schools?
Well, that sure shoots a hole in Keith’s claim that virtually all ID advocates agree that microevolution is unguided.
Denyse, our favorite IDist in disguise Larry Moran, has picked on Ann’s post.
Please ask Ann if she will respond to his comments.
I would understand it if Ann demurred, since it appears Larry has a thing for her. And you know, I wouldn’t want false rumours going viral.
Viruses can be nasty beasts.
In public schools they also teach the English conventions for punctuation, such as using one comma at a time. And at least when I was in school, the value of making an argument rather than merely regurgitating.
(Edited to fix my own grammar.)
Learned Hand:
Careful, LH. Spamagain77’s punctuation tics are a sensitive subject. 😀
WJM:
It does?
Denyse,
I see Ann seems to have responded to Larry. I guess she is not all that worried about amorous viral cyber-infections.
She knows her microbiology!!!
Steve:
Link, please. (What is it about IDers and links??)
Larry’s post is: http://sandwalk.blogspot.ca/20.....ainst.html
I did not find any post from Ann Gauger on sandwalk.
It is very difficult to read the sandwalk comments because they are so darn snooty and disrespectful. That said, there were at least two research papers sited that do a rather impressive job of countering Ann’s paper.
I do wish that respectful, honest conversation on this topic were more common. It would be nice to see people willing to recognize the points that the other side had made, and honestly search for truth.
WJM:
Well, I, for one, am an ID advocate and I certainly disagree that microevolution is unguided.
Moose Dr
I too have made many spelling mistakes and English has so many instances for homophone misplacement, so please don’t think I am picking on you. It’s just that your mistake had so much unintended winsomeness.
You stated:
–emphasis mine.
Now I could give you the benefit of the doubt that you were using the transitive verb “sited” as seen in this definition from “The Free Dictionary”
But I don’t think you were commenting on how the papers were placed on the web site.
Of course you could have also meant “sighted” as in they had previously not been seen and then they suddenly came into view. But this usually happens to various types of prey and not to research papers.
I think what you meant is “cited”.
Anyway, please don’t take offense. I found the mistake very amusing.
Just think, it shows that is possible to cite a sighting that is sited, a remarkable stuffing of homophones into one clause which although obscure, has a perfectly acceptable meaning.
I also find it amazing that there are people out there that look at the incredible ability we as humans have to amuse ourselves with the intricacies of similar sounding words and their meaning and yet think all of this happened by chance.
I’m a little unclear on Gauger’s position regarding evolution. Is she in the Behe camp – an Old Earth Creationist who accepts the observed pattern of common descent and just rejects variation and selection as sufficient to account for all the observed changes?
I suspect Edward, Steve, Mapou, Bornagain77, JDH and Quest are all YEC, so what does it matter about the details if you reject the whole idea of common descent out of hand?
Oops I missed WJM. I guess it would be giving too much away for WJM to say whether he rejects common descent out of hand or whether he merely questions whether evolutionary mechanisms are sufficient to explain the observed pattern of common descent.
Another critique of Axe’s 2004 paper. I see it has been cited 77 times according to Google Scholar. So it seems to have had adequate exposure to those working in the field.
Alicia Renard:
I guess the same can be said for materialists; what difference do the details make if you reject the idea of ID out of hand?
If “the details” show it to be a matter of fact that natural selection and random mutation are not sufficient to explain novel enzyme functions, and that intelligence is required, I suggest that would be quite important to people on both sides of the ID debate regardless of their original position.
I question whether the theoretical capacity of supposedly unguided evolutionary mechanisms (1) have been shown by Darwinists to be sufficient, and (2) can be shown to be sufficient even in principle.
Common descent is an entirely irrelevant consideration as far as I’m concerned.
AR: Passed by for a moment on a Windows 8.1 behaviour test (let’s hope Win X fixes the mess . . . ). Please, recalibrate your estimator; e.g. BA77 is famously not YEC, and in fact YEC does not seem to be a significant view here at UD, apart from SalC in some moods and Paul Nelson. It may help clarify your perspective to appreciate that the cosmological fine tuning side of ID has spent a fair bit of effort looking at fine tuning and a big bang cosmology that tends to point to an age on the observed cosmos of c 14 BY for several decades. (IIRC, ICR’s Russell Humphreys some years back had an idea of a time freeze effect that sets a 15 KY earth in a 15 BY cosmos, but I have not followed up on that beyond noticing it as a curiosity and not seeing onward signs.) KF
PS: Win 8.1 seems to be a bit better behaved this morning.
WJM writes:
The difference would be that ID proposes no details; no entailments, no alternative hypothesis. Behe’s IC and Dembski’s CSI only purportedly demonstrate inadequacies or impossibilities in evolutionary theory. No alternative scientific explanations are offered.
That’s not any clearer. Are you saying you don’t dispute the observed pattern of common descent and the time-span over which it has occurred?
It’s not irrelevant to Behe, Axe or Gauger, apparently, or why would they be arguing that evolutionary mechanism fail to account adequately for common descent. Common descent is certainly irrelevant if you reject the observation of common descent as evidenced by phylogeny, molecular analyses and fossil evidence. Do you?
Alicia Renard said:
ID proposes such things; this has been pointed out to you repeatedly. Ignoring it and insisting on repeating this talking point as if it hasn’t been addressed doesn’t move the debate forward.
The scientific theory of ID is offered. ID doesn’t just point out the weakness of a presumed unguided evolutionary process, but also reaches an inference to best known explanation for the particular kinds of features in question: intelligent design.
Since it is irrelevant to me and any arguments I engage in, I have no reason to either dispute or promote it.
I’m not Behe, Axe or Gauger.
I don’t reject or accept it. It’s an irrelevant consideration for both my personal views and any arguments I engage in. I don’t adopt beliefs or opinions about things that are entirely irrelevant to me.
Alicia Renard, you would be wrong in your suspicion of me being a YEC. I have always been an old earth creationist. I reject the ‘pattern’ of common descent simply because there is no ‘pattern’ for it. The Cambrian Explosion by itself turns Darwin’s tree of life upside-down. The fossil record after the Cambrian Explosion is also infamous for being a record of ‘top down’ sudden appearance and stasis. ,,, And besides Neo-Darwinists having a grossly inadequate mechanism in random variation and selection, the genetic evidence is far more problematic than you seem to realize. Cladistics is joke of a ‘science’ that assumes into its premises the very conclusion of common descent that it is trying to prove. As for an ‘alternative hypothesis’, The ‘hypothesis’ given to us from the evidence itself is as such:
A. L. Hughes’s New Non-Darwinian Mechanism of Adaption Was Discovered and Published in Detail by an ID Geneticist 25 Years Ago – Wolf-Ekkehard Lönnig – December 2011
Excerpt: The original species had a greater genetic potential to adapt to all possible environments. In the course of time this broad capacity for adaptation has been steadily reduced in the respective habitats by the accumulation of slightly deleterious alleles (as well as total losses of genetic functions redundant for a habitat), with the exception, of course, of that part which was necessary for coping with a species’ particular environment….By mutative reduction of the genetic potential, modifications became “heritable”. — As strange as it may at first sound, however, this has nothing to do with the inheritance of acquired characteristics. For the characteristics were not acquired evolutionarily, but existed from the very beginning due to the greater adaptability. In many species only the genetic functions necessary for coping with the corresponding environment have been preserved from this adaptability potential. The “remainder” has been lost by mutations (accumulation of slightly disadvantageous alleles) — in the formation of secondary species.
http://www.evolutionnews.org/2.....53881.html
‘ The difference would be that ID proposes no details; no entailments, no alternative hypothesis.
‘ID proposes such things; this has been pointed out to you repeatedly. Ignoring it and insisting on repeating this talking point as if it hasn’t been addressed doesn’t move the debate forward.’
Shame on you, Alicia! Wilful, selective blindness is worse than mental deficiency.
Alicia Renard:
LoL! Please tell us what details, entailments and hypotheses are for unguided/ blind watchmaker evolution. I have already provided YOU with the entailments and hypothesis for ID. That means you are lying.
What observed pattern?
BTW Axe has rebutted Hunt- to his face even- go figure.
Is there a place where people- scientists included- can actually support unguided evolution with actual evidence and experimentation? Is there a place where people- scientists included- can produce details, entailments and hypotheses for unguided evolution?
Such a place doesn’t exist on our planet…
OK.
I see WJM, Axel, Joe all make the same broad claim; that ID proposes some kind of alternative scenario to evolutionary theory.
And that would be?
Alicia Renard said:
You keep saying “evolutionary theory” even though you have been corrected over and over. ID proposes that instead of unguided evolutionary processes, an intelligently designed/guided process is a better fit to to the evidence.
We are not arguing “evolutionary theory” vs something else, but rather guided vs unguided evolutionary processes. Whether or not there is common descent is irrelevant to that argument – information which is covered in the faq I’ve referred you to several times now.
http://www.uncommondescent.com/faq/
WJM writes:
Well that is very clear. So I’m correct in saying that ID makes no alternative proposal to the observed facts. It merely questions the adequacy of evolutionary theory. I’ll stop asking whether ID has a theory or hypothesis now, shall I? I mean, nobody is under the false impression that ID proposes an alternative to Darwinian evolution, do they? The BioLogos position is quite clear. Observed facts are not in question and the creator works through natural means. I don’t understand why OEC folk who don’t like the “unguided” element don’t just work with them.
It’s beside the point if one is either agreeing or disagreeing with Mike Behe because the facts of common descent are not in dispute.
ETA correct garbled grammar!
Alicia Renard said:
I’m not sure what this even means. Observed facts are observed facts. All scientific theories must account for the observed facts.
Are you doing this deliberately now? I’ve corrected you several times. It questions the adequacy of unguided evolutionary theory.
ID suggests an additional causal agency which unguided evolutionary theory doesn’t permit to account for observed facts which, ID argues, require intelligent guidance.
Again, are you being purposefully dense? All intelligent designers that we know of “work through natural means”, if by that you mean that we instantiate our designs in the world in a way that accounts for and employs natural laws and tendencies. What is “not natural” about the process is the artificial nature of the design process. Artifice vs natural/random.
A battleship is not instantiated into the world via magic; however, natural forces cannot account for it’s existence. One requires artifice as part of the causal explanation.
William J Murray: All scientific theories must account for the observed facts.
A good theory makes predictions. A great theory, such as Darwin’s Theory of Evolution, spawns entire new fields of study.
Your proposed theory should entail empirical predictions, especially those that distinguish the theory from competing theories.
William J Murray: All intelligent designers that we know of “work through natural means”
So how did the designer of life instantiate their design?
Alicia- there isn’t any evolutionary theory
For one ID predicts that enzymes can’t evolve genuinely new functions by unguided means. Did you even read the OP?
Are you being purposefully dense? ID is about detecting design.
Unguided evolution doesn’t make any predictions
And yet there aren’t any fields studying unguided evolution. Darwin’s concept has proven to be useless.
And we have told you what they are wrt ID. Your willful ignorance means nothing here.
Box: one ID predicts that enzymes can’t evolve genuinely new functions by unguided means. Did you even read the OP?
A good hypothesis will make specific predictions, not general can never happen predictions (unless we can explore the entire universe of possibilities). Unfortunately, that’s a negative claim that’s very difficult to show directly.
In any case, phylogeny strongly implies that they do. And we also have experimental evidence that they do.
Box: Are you being purposefully dense? ID is about detecting design.
Then it’s not a theory as suggested by William J Murray above.
Zachriel asks
I would assume by using the materials available, employing and accounting for natural forces and tendencies the same way a designer of a car instantiates his design.
So I take it then that you don’t fancy the second law of thermodynamics.
What a hoot!
Upthread, the Darwin-faithful ask for a roll call on who believes in common descent or not, as if it were a philosophical position or an article of faith! LOL.
WJM writes:
The problem appears to be that you are equivocating with the meaning of common words. Natural can be an antonym to artificial. Typically it is used to make some false distinction such as sea salt being natural and refined rock salt being artificial. I’ll grant you that it has some value when examining the quality of yoghourt. If you are using natural as an antonym to supernatural then there is no distinction to be made between designed and natural, as an artificial or constructed object is still natural in this sense. And any curious person, presented with an unfamiliar object might wonder what it is for and who or what made it.
So “intelligent design” methods can confirm that battleships are constructed by people. Well, I guess that’s progress of a sort. 🙂
Box writes:
But the paper cited by Zachriel shows that prediction to be wrong.
Alicia Renard said:
What paper cited by Zachriel?
No, the problem lies in your stubborn refusal to educate yourself in even the most basic aspects of ID theory even when you are repeatedly directed to a resource created for that very purpose.
ID makes no case about anything “supernatural”. It is a theory about distinguishing between naturally occurring and artificially produced patterns.
It would be progress if an anti-ID advocate could possibly admit that “Intelligent Design” is a term used to describe the capacity of humans to generate patterns/instantiations of matter that could not be accomplished if you took away their intelligence and their capacity to teleologically design instantiations of matter that do not exist at the time of design.
There are lots of capacities of humans that have zero bearing on whether or not a battleship can be designed and built. Most of the physical features we share with other animals are useless in generating such an artifact; so it is reasonable to identify with terminology the capacity that makes battleship design and instantiation a plausibility.
It is also entirely reasonable to consider that such a capacity might exist in other, non-human entities. Scientists have been exploring the possible intelligence of non-human animals for a long time using various pattern-recognizing and producing schemes, largely involving tool-creation and language use.
William J Murray: I would assume by using the materials available, employing and accounting for natural forces and tendencies the same way a designer of a car instantiates his design.
Your description is too general to have entailments. Here’s a partial answer for cars:
http://static.guim.co.uk/sys-i.....ry-008.jpg
We can provide additional details; from the original planning to the final paint job; if you like.
Box: So I take it then that you don’t fancy the second law of thermodynamics.
The Second Law was original devised as a generalization from a vast number of experiments, and as a limit. Since then, it has been reformulated in statistical terms so it no longer depends on simple induction.
In addition, there is evidence that argues against the claimed limit for enzyme evolution. We have phylogenetic evidence, and we have direct evidence. See Schultes & Bartel, One Sequence, Two Ribozymes: Implications for the Emergence of New Ribozyme Folds, Science 2000. Enzymes can be promiscuous, and a secondary function can evolve alongside the primary function.
“Battleships are not Natural”. Not Supernatural either. I guess we consider them Unnatural?
How about a hydroelectric dam? A condo complex? Unnatural, not part of Nature? Beaver dam, ant colony – are those considered natural? Is it only sapien that can rise above Nature?
Or maybe that battleship and it’s design are 100% natural? Just arrangements of atoms and molecules emerging from Mother Earth?
I’ll go with man is special. Can rise above Nature. One Man even did the Supernatural Thing. Son of man.
Alicia, @18
Very curious why you would peg me as YEC. I believe that YEC is a possible interpretation of Genesis 1, but by no means do I think that it is a necessary interpretation of Genesis 1.
The major take aways I get from Genesis 1 and the rest of the Bible regarding the creation of the heavens and the earth and life is.
1. God did it.
2. It was a process that took some amount of time and not an instantaneous one.
3. The timing and sequence was directed by God.
4. It would not have happened except for God’s intervention on each epoch (Day).
5. Creation of man was a unique and distinct event.
6. God has made it so obvious that His intervention was necessary at each stage that the only rational belief is God did it.
I fully believe that those who refuse to believe in the creation by God are closing their eyes to the truth. I apologize for being so blunt, but I just can not understand how any materialistic explanation for the explanation of earth and life is plausible. I know others disagree with this position. I just do not see it at all.
Zachriel,
You said,
I will admit it does not depend on “simple” induction, yet it still comes from induction. All scientific laws depend on induction whether they are derived from macroscopic principles or micro statistics. We see some behavior, we make laws which describe the behavior and assume by faith that the universe is a rational place and the laws will not all of the sudden vary from day to day. Promotion of scientific observation to law is a statement of faith. The materialist who has rejected God as creator has no reasonable expectation that things will continue behaving as they currently do except by induction. All elevation of physical observations to the state of physical law are a statement of faith and involve a metaphysical assumption which can not be proven.
At least I have a scientific/societal basis for my assumption of God as creator. By His resurrection, Jesus Christ demonstrated that He was God and gave evidence to eye witnesses of this.
Your assumptions of materialism have no such basis and in their consequence necessarily lead to such unwarranted assumptions as a miraculous unexplainable origin of life, and a multitude of undetectable universes.
I simply rationally believe that my metaphysical choice makes more sense.
JDH: I will admit it does not depend on “simple” induction, yet it still comes from induction.
We were discussing so-called negative predictions. As we pointed out, the Second Law was originally formulated as a response to widespread experimentation that showed limits to efficiency. In other words, scientists had explored the universe of normal mechanical interactions, and in response formulated the law. This was given a stronger basis through statistical mechanics.
JDH: We see some behavior, we make laws which describe the behavior and assume by faith that the universe is a rational place and the laws will not all of the sudden vary from day to day.
Or just assume, as one might the parallel postulate.
Alicia Renard:
ID is currently a ‘hypothesis’ within the current ToE, which sits with equal efficacy along side the hypothesis of natural causation. Neither are empirically confirmable at this time.
But in answer to the question of proposed ID methodologies, there are many, from supernatural intervention, to ‘set-up’ intelligent mechanisms, to intervention by genetic modifications. Pre-Cambrian may have involved more, but I have proposed some post-Cambrian methods, which I have summarized on several posts. From a recent post:
“We are on the cusp of being able to alter phenotypic outcomes, by PCR, electrophoresis, and subsequent spicing to alter structures and codes. For our progress at this point, search ‘genetic engineering’. While not proof of prior gene altering to alter phenotypes, it is at least evidence that it can be done, while at this juncture, no substantiating evidence exists for random mutations and horizontal gene transfer to alter phenotypes.”
This from my comment #3 of 15 comments on this newspaper blog.
http://www.charlestoncitypaper.....-evolution
Alicia Regard’s thinking; “..well if evolution can’t do it.. then aliens could… which is ok, if you have an explanation how aliens have come about… well… blind, and specifically guided faith can do it… It is called in my area: The Larry Moran Slip; If you don’t have proof that gods did it… evolution must have done… somehow… even it doesn’t make sense…
What’s quite telling is the fact that Dr. Gauger applied in vitro mutagenesis and then selected those mutants that fit her purposes. Sounds somehow familiar but I just cannot remember the specific term. IIRC it started with “e” and ended with something like “volution”. Didn’t I see many statements here that if true would render her approach impossible (like “mutations are not random” etc.).